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ProteomicsBoxCar and Shotgun Proteomic Analyses Reveal Molecular Networks Regulated by UBR5 in Prostate Cancer
The project aims to compare BoxCar and shotgun proteomics in identifying proteins regulated by UBR5 in prostate cancer cells.
ORGANISM(S): Homo sapiens (Human) 
2022-02-22 | PXD026382 | Pride
Xrcc3 Proteomics Prostate cancer Network Boxcar Shotgun Ubr5 Fancd2 
ProteomicsBoxCar data acquisition mode helps deeply and high efficiency analysis diabetic urinary proteome
In this study, we explored BoxCar method in urine proteome sample from diabetic patients and systematically evaluated the advantages of BoxCar method in proteome analysis in diabetes urine compared to standard data method.
ORGANISM(S): Homo Sapiens 
2024-12-02 | PXD058503 |
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana – Technical Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD038989 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana - Abiotic Stress Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD039004 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
UnknownBoxCar and shotgun proteomic analyses reveal molecular networks regulated by UBR5 in prostate cancer.
Not available
S-EPMC8844095 | biostudies-literature
UnknownBoxcar Imaging FCS Reveals Membrane Raft Stabilization Kinetics in Antigen-Stimulated Mast Cells.
Not available
S-EPMC12724450 | biostudies-literature
ProteomicsBoxCar acquisition method enables single shot proteomics at a depth of 10,000 proteins in 100 minutes
Great advances have been made in sensitivity and acquisition speed on the Orbitrap mass analyzer, enabling increasingly deep proteome coverage. However, these advances have been mainly limited to the MS2 level whereas ion beam sampling for the full MS scan remains extremely inefficient. Here we repo...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2019-10-04 | MSV000084418 | MassIVE
ProteomicsBoxCar acquisition method enables single shot proteomics at a depth of 10,000 proteins in 100 minutes
Great advances have been made in sensitivity and acquisition speed on the Orbitrap mass analyzer, enabling increasingly deep proteome coverage. However, these advances have been mainly limited to the MS2 level whereas ion beam sampling for the full MS scan remains extremely inefficient. Here we repo...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) Escherichia coli 
2018-05-02 | PXD006109 | Pride
Cerebellum Q exactive Plasma Cell lines Mouse Human 
ProteomicsA mouse model of Fragile X Syndrome analyzed by quantitative proteomics: a comparison of methods
We have compared the performance of seven different strategies in the analysis of a mouse model of Fragile X Syndrome, involving the knockout of the fmr1 gene that is the leading cause of autism spectrum disorder. Focusing on the cerebellum, we show that Data-Independent Acquisition (DIA) and the TM...
ORGANISM(S): Mus musculus (Mouse) 
2023-08-21 | PXD039885 | Pride
Quantitative proteomics Boxcar Complementary ion quantification Dia Method comparison Label-free Tmt labeling Mouse brain proteomics Fragile x syndrome 
ProteomicsComparative Analysis of Soybean Seed Proteome Based on Different Mass Spectrometry Acquisition Strategies
This study established a soybean seed proteome database and analyzed the raw mass spectrometry data of BoxCar and DIA on MaxQuant based on this database. Subsequently, the three mass spectrometry acquisition strategies, DDA, DIA and BoxCar, were compared for their depth of protein identification, da...
ORGANISM(S): Glycine Max 
PXD052278 |
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