Bronchial epithelium

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Unknown (744)
Transcriptomics (351)
Genomics (241)
Proteomics (35)
Methylation profiling (6)
Other (3)
Metabolomics (3)

Organisms

Homo sapiens (335)
Mus musculus (41)
Andropogon gerardi (23)
Bacteria (23)
Canis lupus familiaris (23)
Clostridium perfringens (23)
Cnidaria (23)
Cricetulus griseus (23)
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Human betaherpesvirus 5 (23)
Japanese encephalitis virus group (23)
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Mesocricetus auratus (23)
Miscanthus x giganteus (23)
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Gallus gallus (2)
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synthetic construct (1)
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Organisms

Homo sapiens (163)
Mus musculus (14)
Rattus norvegicus (5)
Aspergillus fumigatus (1)
Equus caballus (1)
Macaca mulatta (1)
human lung metagenome (1)

Repository

biostudies-arrayexpress (221)
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geo (164)
pride (23)
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iProX (3)
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jPOST (1)

Tissue

Epithelial cell (11)
Cell culture (9)
Lung (7)
Bronchial epithelial cell (5)
Bronchial epithelial cell line (1)
Bronchial epithelium (1)
Bronchial smooth muscle cell (1)
Bronchus smooth muscle (1)
Macrophage (1)
Nasal epithelium cell line (1)
Prokaryotic cell (1)
Respiratory epithelial cell (1)

Disease

Asthma (4)
Cystic fibrosis (4)
Normal (3)
Disease free (2)
S enteritidis (1)
Non infected (1)
H9N2 infected (1)
Chronic obstructive pulmonary disease (1)
Nipah virus encephalitis (1)
Pertussis (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (13)
Bottom-up proteomics (6)
Mass spectrometry (3)
Data-dependent acquisition (3)
Data-independent acquisition (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Affymetrix GeneChip Scanner 3000 7G (8)
Illumina NovaSeq 6000 (7)
Illumina HiSeq 2500 (3)
NextSeq 500 (3)
Scanning hardware (2)
Illumina NovaSeq X (2)
Illumina HiSeq 4000 (2)
LTQ Orbitrap (2)
LTQ Velos (2)
Q Exactive (2)
Chromium Next GEM Single Cell Multiome Reagent Bundle (1)
10X Genomics reagents (1)
10x chromium (1)
OpenArray NT cycler (1)
PCR Applied Biosystems (1)
Qubit (1)
Agilent (1)
IScan (Illumina) (1)
Affymetrix GeneChip(R) HT Scanner (1)
Other (1)
N/A (1)
Illumina NextSeq 500 (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL (1)
LTQ XL (1)
Orbitrap Eclipse (1)

Publication Date

2013 (36)
2012 (33)
2011 (33)
2022 (25)
2026 (24)
2021 (24)
2014 (24)
2010 (23)
2020 (22)
2016 (19)
2015 (19)
2025 (18)
2023 (18)
2019 (15)
2009 (15)
2008 (14)
2006 (14)
2007 (12)
2024 (11)
2018 (11)
2017 (10)
2005 (2)

CHEBI ID

CHEBI:49033 (2)
CHEBI:15760 (2)
CHEBI:16977 (2)
CHEBI:15428 (2)
CHEBI:17929 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:17750 (2)
CHEBI:16467 (2)
CHEBI:18019 (2)
CHEBI:17203 (2)
CHEBI:18183 (2)
CHEBI:18050 (2)
CHEBI:15971 (2)
CHEBI:16857 (2)
CHEBI:16015 (2)
CHEBI:16414 (2)
CHEBI:17191 (2)
CHEBI:15603 (2)
CHEBI:16643 (2)
CHEBI:17895 (2)
CHEBI:17295 (2)
CHEBI:194970 (1)
CHEBI:53741 (1)
CHEBI:21555 (1)
CHEBI:76649 (1)
CHEBI:87694 (1)
CHEBI:87146 (1)
CHEBI:24579 (1)
CHEBI:55335 (1)

Metabolite Name

N-Acetyl-Glu (1)
N-Acetyl-Asp (1)
2,5-FurandicarboxylicÊacid (1)
N-Methyl-Asp (1)
2-oxoisocaproic acid (1)
N-Acetyl-Tyr (1)
N-Acetyl-Arg (1)
N-Acetyl-His (1)
N-Acetyl-Met (1)
(N6+N1)-Acetyl-Lys (1)
N1-Acetyl-Lys (1)
N-Acetyl-Ile (1)
N-Acetyl-Val (1)
N-Acetyl-Pro (1)
N-Acetyl-Ser (1)
N-Acetyl-Ala (1)
N-Acetyl-Gly (1)
HPHPA (1)
2-Hydroxy-3-methylvaleric acid (1)
3,4-Dihydroxybutyric acid (1)
N-Acetyl-Leu (1)
2-Hydroxyisovaleric acid (1)
P-Hydroxyhippuric acid (1)
3-Aminoisobutyric acid (1)
3-Hydroxyisobutyric acid (1)
Prolylphenylalanine (1)
L-Cysteinylglycine disulfide (1)
3-Indoleacetic acid (1)
Oxalacetic acid (1)
2-hydroxyglutaric acid (1)

First Public Date

2014 (38)
2026 (21)
2022 (19)
2021 (19)
2024 (18)
2025 (15)
2023 (14)
2020 (14)
2019 (14)
2017 (10)
2013 (10)
2018 (6)
2015 (4)
2016 (3)

Classification

fungi (1)

Study type

Transcription profiling by array (161)
RNA-seq of coding RNA (20)
Methylation profiling by array (6)
Transcription profiling by SAGE (5)
Unknown experiment type (4)
ChIP-seq (4)
MicroRNA profiling by array (4)
RNA-seq of coding RNA from single cells (4)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
Human - High-throughput sequencing (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
Other (1)
Single nucleus RNA sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (87)
2020 (75)
2023 (72)
2022 (67)
2025 (56)
2018 (54)
2011 (52)
2016 (49)
2013 (49)
2024 (48)
2019 (48)
2012 (46)
2017 (42)
2015 (42)
2014 (42)
2010 (41)
2009 (25)
2008 (24)
2007 (16)
2026 (10)
2006 (9)
2001 (3)
2005 (2)
2002 (2)
2003 (1)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

Univ. Bordeaux, INSERM, CRCTB, U 1045, F-33000 Bordeaux, France (3)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, UK (1)
Competence Center Functional Genomics, Junior Research Group Pathoproteomics, University of Greifswald, 17489 Greifswald, Germany (1)
Core Unit Proteomics, Berlin Institute of Health at Charite- Universitaetsmedizin Berlin and Max Delbrueck Center for Molecular Medicine (MDC), 13125 Berlin, Germany (1)
Department of Experimental Medical Science, Respiratory Immunopharmacology group, Biomedical Centre (BMC), Lund University (1)
Department of Microgravity and Translational Regenerative Medicine, Otto-von-Guericke University Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany (1)
Dufour Lab, University of Calgary, department of Physiology and Pharmacology, Biochemistry and Molecular Biology (1)
Friedrich-Loeffler-Institut (1)
Glycoproteomics Lab, Parasitology department, Institute of Biomedical Sciences of University of São Paulo, Brazil. (1)
Inserm UMR S 938, CRSA, Bât. Kourilsky, 34 Rue Crozatier, 75012 Paris, France. (1)
Institute of Lung Health and Immunity and Comprehensive Pneumology Center with the CPC-M BioArchive, Helmholtz Zentrum München, Member of the German Center of Lung Research (DZL) - München (Germany) (1)
Institute of Lung Health and Immunity, and Comprehensive Pneumology Center with the CPC-M bioArchive, Ludwig-Maximilians-Universität München and Helmholtz Zentrum München, Munich, Germany, Member of the German Center for Lung Research (DZL). (1)
Institute of Microbiology of the CAS, v. v. i. (1)
Lung Repair & Regeneration Department, Boehringer Ingelheim Pharma GmbH & Co. KG (1)
Molecular and Integrative Cystic Fibrosis (miCF) Research Laboratory, School of Women’s and Children’s Health, UNSW Medicine, UNSW Sydney (1)
Respiratory and Emerging Viruses group Department of Infection Biology Institute of Infection and Global Health, University of Liverpool (1)
Southern University of Science and Technology (1)
U1045, CRCTB, Bâtiment PTIB, Avenue de Haut Lévèque, 33000 Bordeaux, France (1)
University Medicine Greifswald (1)
Université de Paris, BFA unit UMR 8251 CNRS (1)

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Comparative metabolomics analysis of bronchial epithelium during barrier establishment after allergen exposure

BACKGROUND: Several studies have shown a correlation between an altered metabolome and respiratory allergies. The epithelial barrier hypothesis proposes that an epithelial barrier dysfunction can result in allergic diseases development. Der p 1 allergen from house dust mite is a...

2023-08-22 | MTBLS1755 | MetaboLights

Proteomic analysis of bronchial epithelium challenged with bronchial smooth muscle extracellular vesicles

The main objective of CHARMACOMA is to explore the capacity of the severe asthmatic bronchial smooth muscle to modify bronchial epithelium physiology from a metabolic point of view.

ORGANISM(S): Homo sapiens (Human)

2026-02-09 | PXD055949 | Pride

Bronchial epithelium

Proteomic analysis of bronchial epithelium challenged with bronchial smooth muscle extracellular vesicles

The main objective of CHARMACOMA is to explore the capacity of the severe asthmatic bronchial smooth muscle to modify bronchial epithelium physiology from a metabolic point of view.

ORGANISM(S): Homo sapiens (Human)

2026-02-09 | PXD059603 | Pride

Bronchial epithelium

Gene expression from bronchial and nasal epithelial cell samples of healthy current and never smokers.

mRNA expression was assayed from bronchial epithelial cells collected via bronchoscopy and nasal epithelial cells collected by brushing the inferior turbinate from healthy current and never smoker volunteers in order to determine the relationship between smoking-related gene expression changes in b...

ORGANISM(S): Homo sapiens

2011-03-14 | E-GEOD-16008 | biostudies-arrayexpress

Metabolic reprogramming in the airway epithelium of high risk individuals

We investigated proteins identified by shotgun proteomics in cytologically normal airway epithelial cells from individuals at different levels of risk for lung cancer. We identified 2869 proteins in bronchial brushings from individuals at low, moderate or high risk for lung cancer. Pathway analysis ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000079331 | MassIVE

Expression profiling of normal lung parenchyma

2 normal lung parenchyma SAGE libraries, generated from 2 pools of 4 individuals each Discussed in the study: IDENTIFICATION OF NOVEL LUNG GENES IN BRONCHIAL EPITHELIUM BY SERIAL ANALYSIS OF GENE EXPRESSION Kim M. Lonergan1, Raj Chari1, Ronald J. deLeeuw1, Ashleen Shadeo1, Bryan Chi1, Ming-Sound T...

ORGANISM(S): Homo sapiens

2006-11-20 | E-GEOD-3708 | biostudies-arrayexpress

Transcription profiling of human small airway bronchial epithelium to assess gene expression in phenotypically normal smokers compared to matched non-smokers

The earliest morphologic evidence of changes in the airways associated with chronic cigarette smoking is in the small airways. To help understand how smoking modifies small airway structure and function, we developed a strategy using fiberoptic bronchoscopy and brushing to sample the human small air...

ORGANISM(S): Homo sapiens

2007-09-06 | E-GEOD-3320 | biostudies-arrayexpress

Expression profiling of bronchial epithelium

19 bronchial epithelial SAGE libraries were constructed and analyzed in this study. Discussed in the study: IDENTIFICATION OF NOVEL LUNG GENES IN BRONCHIAL EPITHELIUM BY SERIAL ANALYSIS OF GENE EXPRESSION Kim M. Lonergan1, Raj Chari1, Ronald J. deLeeuw1, Ashleen Shadeo1, Bryan Chi1, Ming-Sound Tsa...

ORGANISM(S): Homo sapiens

2006-07-14 | E-GEOD-3707 | biostudies-arrayexpress

Multiple roles for Grainyheadlike transcription factors in the establishment and maintenance of human mucociliary airway epithelium

The airways of the human lung are lined by an epithelium made up of ciliated and secretory luminal cells and undifferentiated p63+ Krt5+ basal cells. The integrity of this epithelium and its ability to act as a selective barrier are critical for normal lung function. In other epithelia there is evid...

ORGANISM(S): Homo sapiens

2013-05-07 | E-GEOD-44718 | biostudies-arrayexpress

Severe asthmatic bronchial smooth muscle decreases epithelial response to rhinovirus infection.

Asthma is a very frequent airway disease that affects 6 to 20% of the population. Severe asthma, represents 3 to 5% of all asthmatic patients and is histologically characterized by an increased bronchial smooth muscle (BSM) mass and clinically by viral exacerbations. Functionally, BSM remodeling had...

ORGANISM(S): Homo sapiens (Human)

2023-05-02 | PXD015604 | Pride

Epithelium Smooth muscle cells Asthma

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1383 Results

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BACKGROUND: Several studies have shown a correlation between an altered metabolome and respiratory allergies. The epithelial barrier hypothesis proposes that an epithelial barrier dysfunction can result in allergic diseases development. Der p 1 allergen from house dust mite is a...

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