Cardoso F F - OmicsDI

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Unknown (912)
Proteomics (16)
Transcriptomics (9)
Genomics (4)
Metabolomics (3)

Organisms

Homo sapiens (12)
Mus musculus (6)
Gallus gallus (2)
Lactococcus lactis (1)
Monodelphis domestica (1)
Rattus norvegicus (1)
Ardisia guianensis (1)
Danio rerio (1)
Ectomocoris (1)
Megalopyge opercularis (1)
Oncocephalus (1)
Phoneutria nigriventer (1)

Organisms

Oreochromis mossambicus (1)
Mus musculus (1)

Repository

pride (15)
biostudies-arrayexpress (9)
MetaboLights (3)
EGA (2)
ENA (2)
MassIVE (1)

Tissue

Brain (5)
Liver (3)
Venom (3)
Astrocyte (2)
Heart (2)
Microglial cell (2)
Adult stem cell line (1)
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Disease

Acute leukemia (1)
Alzheimer's disease (1)
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Autism spectrum disorder (1)
Brain cancer (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Melanoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Neuroblastoma (1)
Pancreatic cancer (1)
Peripheral primitive neuroectodermal tumor (1)
Prostate adenocarcinoma (1)
Renal Wilms' tumor (1)
Retinoblastoma (1)
Stomach cancer (1)
Synovial sarcoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (7)
Bottom-up proteomics (4)
Data-independent acquisition (4)
Mass spectrometry (3)
Gel-based experiment (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Chromium 10x (2)
NextSeq 550 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2500 (1)
MicrOTOF-Q (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)

Publication Date

2022 (5)
2026 (4)
2023 (4)
2024 (4)
2025 (4)
2019 (1)
2016 (1)
2012 (1)
2010 (1)
2008 (1)
2021 (1)
2020 (1)

CHEBI ID

CHEBI:45996 (2)
CHEBI:10072 (1)
CHEBI:111173 (1)
CHEBI:1148 (1)
CHEBI:11814 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:133083 (1)
CHEBI:133530 (1)
CHEBI:1387 (1)
CHEBI:141538 (1)
CHEBI:14314 (1)
CHEBI:144330 (1)
CHEBI:15318 (1)
CHEBI:15344 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15468 (1)
CHEBI:1547 (1)
CHEBI:15473 (1)
CHEBI:15487 (1)
CHEBI:15517 (1)
CHEBI:15531 (1)
CHEBI:15533 (1)
CHEBI:15539 (1)

Metabolite Name

(11Z,14Z)-Eicosadienoic acid (1)
(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
1,3-Diaminopropane (1)
1-Meadoyl-glycero-3-phosphate (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
1-O-Octadecylglycerol-3-phosphatidylcholine (1)
12-Hydroxystearic acid (1)
15-Hydroxypentadecanoic acid (1)
16(R)-HETE (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Dihydroxypropyl stearate (1)
2,3-Dinor-6-oxoprostaglandin F1alpha (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)
2,5-Dihydroxybenzaldehyde (1)
2,5-Dihydroxybenzoic acid (1)
2-(Hydroxymethyl)butanoic acid (1)
2-Amino-3-methoxybenzoic acid (1)
2-Aminoadipic acid (1)
2-Deoxy-5-cytidylic acid (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-D-ribose (1)
2-Deoxyadenosine (1)
2-Deoxyadenosine 5-triphosphate (1)
2-Deoxycytidine (1)

First Public Date

2024 (1)
2020 (1)

Study type

Transcription profiling by array (5)
Transcription profiling by RT-PCR (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (124)
2023 (115)
2021 (113)
2025 (98)
2020 (87)
2024 (86)
2018 (52)
2019 (48)
2017 (35)
2016 (34)
2026 (23)
2015 (22)
2014 (22)
2013 (13)
2011 (11)
2012 (10)
2010 (7)
2009 (7)
2008 (6)
2007 (4)
2006 (2)
2004 (1)
2001 (1)

Lab affiliation

DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (2)
Institute for Molecular Biosciences, The University of Queensland (2)
Cardoso Lab, Department of Biology, Technische Universität Darmstadt, Germany (1)
Centre of Molecular Biology University Heidelberg Im Neuenheimer Feld 282 D-69120 Heidelberg Germany (1)
Department of Biology, Technical University of Darmstadt, Darmstadt, Germany (1)
Federal University of Minas Gerais (1)
Institut für Experimentelle Pharmakologie und Toxikologie (1)
Institute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4122, Australia (1)
Laboratório de Biotecnologia e Biologia Molecular da Universidade Estadual do Ceará, Fortaleza, Ceará, Brazil. Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, Brazil. (1)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (1)
Weill Cornell Medical College, New York City (1)
ZMBH, University Heidelberg Im Neuenheimer Feld 282 69120 Heidelbe4rg Germany (1)
ZMBH, University Heidelberg, Im Neuenheimer Feld 282, 69120 Heidelberg, Germany (1)

Tags

xref:PubMed:28675157 (1)
xref:EuropePMC:PMC7263668 (1)

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The proteomic composition of constitutive heterochromatin in mouse tissues

Pericentric heterochromatin (PCH) forms spatially and temporarily distinct compartments from other nuclear fractions and plays an important role in nuclei organization and genome stability. This highlights the necessity of elucidating the protein compositions of PCH. We find that the PCH compartment...

ORGANISM(S): Mus musculus (Mouse)

2024-05-23 | PXD045223 | Pride

Trastuzumab-based regimens beyond progression: A crucial treatment option for HER2+ advanced/metastatic breast cancer.

Not available

S-EPMC9663523 | biostudies-literature

Supergroup F Wolbachia in terrestrial isopods: Horizontal transmission from termites?

Not available

S-EPMC7819146 | biostudies-literature

MBD2 modulates heterochromatin architecture and composition

Heterochromatin (HC) is essential for nuclear integrity, genome stability, and gene regulation with pericentric heterochromatin (PCH) playing a key role. However, the mechanisms governing PCH compartmentalization remain poorly understood. Recent studies suggest that phase separation (PS) underlies t...

ORGANISM(S): Mus musculus (Mouse)

2025-12-29 | PXD055626 | Pride

Mice brain Dia-ms Mbd2 Pericentric heterochromatin Alphafold server Nuclear fractionation Ps prediction tools Phase separation

A Comprehensive Ecotoxicological Evaluation of a Treated Olive Mill Wastewater and Obtained Sludge.

Not available

S-EPMC12390398 | biostudies-literature

The human DNA ends proteome uncovers an unexpected entanglement of functional pathways.

Not available

S-EPMC4889927 | biostudies-literature

DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements.

Not available

S-EPMC6198450 | biostudies-literature