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Transcriptomics[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni
RNA-seq analysis of the transcriptome of wild type C.jejuni NCTC11168, and of an rpoN mutant of the same strain, both grown in vitro. ArrayExpress Release Date: 2011-06-14 Publication Title: Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni Publication Author List: Roy R. Ch...
ORGANISM(S): Campylobacter jejuni 
2011-07-14 | GSE30621 | GEO
ProteomicsProteogenomics reanalysis of human testis data
Reanalysis of the human testis tissue dataset acquired for the Chromosome-centric Human Proteome Project (C-HPP; PRIDE project PXD002179), with a focus on identifying novel peptides for genome annotation.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-13 | MSV000083973 | MassIVE
ProteomicsDpf2 interactome in mouse embryonic stem cells
Dpf2 is a subunit of the BAF/pBAF chromatin remodelling complex. We have used cross-linking affinity purification-mass spectrometry to explore Dpf2 protein interactions in mouse embryonic stem cells.
ORGANISM(S): Mus musculus (Mouse) 
2019-11-13 | PXD011806 | Pride
Affinity purification Cross-linking Dpf2 Mouse embryonic stem cells Interactome 
ProteomicsGenomic determinants of protein abundance variation in colorectal cancer cell lines
Assessing the impact of genomic alterations on protein networks is fundamental in identifying the mechanisms that shape cancer heterogeneity. We have used isobaric labelling to characterize the proteomic landscapes of 50 colorectal cancer cell lines and to decipher the functional consequences of som...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000081528 | MassIVE
ProteomicsProteomic profiling of Breast cell lines exhibiting epithelial or mesenchymal morphology
We performed quantitative TMT-based proteomic analysis of eight human-derived breast cell lines growing in 2D. The dataset includes the total and phospho-proteomes of seven tumour cell lines: T47D (Epithelial, Luminal, ER+/PR+/HER2-), BT474 (Epithelial, Luminal, ER+/PR+/HER2+), SKBR3 (Epithelial, Lu...
ORGANISM(S): Homo sapiens (Human) 
2024-09-16 | PXD047164 | Pride
Breast Epithelial Mesenchymal 
GenomicsCampylobacter jejuni
[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni
PRJNA144537 | ENA
ProteomicsSimPLIT: Simplified sample preparation for large-scale isobaric tagging proteomics
Large scale proteomic profiling of cell lines can yield valuable insights into the molecular signatures attributed to variable genotypes or induced perturbations. Specifically, the ability to perform deep and rapid proteome analysis of pharmacologically modulated cells could generate drug-protein as...
ORGANISM(S): Homo sapiens (Human) 
2022-08-03 | PXD034022 | Pride
Imids Tmtpro Celmods Targeted protein degradation Cancer cell lines Isobaric labeling 
ProteomicsSimPLIT: Simplified sample preparation for large-scale isobaric tagging proteomics
Large scale proteomic profiling of cell lines can yield valuable insights into the molecular signatures attributed to variable genotypes or induced perturbations. Specifically, the ability to perform deep and rapid proteome analysis of pharmacologically modulated cells could generate drug-protein as...
ORGANISM(S): Homo sapiens (Human) 
2022-08-03 | PXD031510 | Pride
Tmtpro Imids Celmods Targeted protein degradation Cancer cell lines Isobaric labeling 
ProteomicsImproving Human Genome Annotation Using a High-Stringency Proteogenomics Workflow
Reanalysis of three large human tissue proteomics datasets using a bespoke GENCODE database and multiOTHER algorithm high confidence pipeline.
ORGANISM(S): Homo sapiens (Human) 
2016-05-27 | PXD002967 | Pride
Proteogenomics Tissue Gencode Human Proteome 
ProteomicsA degron blocking strategy towards improved CRBN recruiting PROTAC selectivity
The different layers of complexity in PROTAC design have slowed the broad implementation of this novel pharmacological approach. Given the challenges and opportunities of CRL4CRBN hijacking PROTACs we set out to identify and develop broadly implementable strategies to generate PROTACs with improved ...
ORGANISM(S): Homo sapiens (Human) 
2023-07-10 | PXD038503 | Pride
Cereblon Protacs 
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