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ProteomicsIdentification of circRNA-interacting proteins in pancreatic ductal adenocarcinoma
Many studies have demonstrated the importance of circRNA in regulating gene expression through functioning as microRNA sponges. However, the roles of circRNA-protein interaction are not fully understood. Importantly, how circRNA-protein interaction contributes the progression of pancreatic ductal ad...
ORGANISM(S): Homo sapiens (Human) 
2022-02-15 | PXD015048 | Pride
Circganab Circfoxk2 Pancreatic ductal adenocarcinoma Circrna-interacting proteins Circrtn4 
GenomicsCLiPP-Seq
Role of mRNA-interacting circRNA in C2C12 muscle cell differentiation
PRJEB90311 | ENA
Proteomicshuman circRNA binding proteins in neuroblastoma
Circular RNAs (circRNAs), a noncoding RNA class originating from alternative splicing, are highly abundant in neural tissues and were shown to regulate gene expression e.g. by interacting with microRNAs and RNA-binding proteins. Neuroblastoma is an embryonal neoplasia, which arises from undifferenti...
ORGANISM(S): Homo sapiens (Human) 
2023-04-06 | PXD026053 | Pride
Human Neuroblastoma Imr-5 Lc-ms 
ProteomicscircMAN1A2_009-pulled down proteins in HeLa cells
CircRNA pulldown assays were conducted to identify proteins interacting with circMAN1A2_009. In summary, HeLa cell protein extracts were incubated with biotin-labeled circMAN1A2_009 probes obtained from Tsingke Biotechnology, China, at room temperature for 1h. Subsequently, streptavidin magnetic bea...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD052372 | Pride
Circman1a2_009 Hela Pull-down assays 
ProteomicscircRNA regulates macrophage pyroptosis in infection
Identification of interacting proteins of circRNA-encoded proteins
ORGANISM(S): Mus Musculus 
PXD045396 |
ProteomicsData Submission: Proteomic Identification of Proteins Interacting with CircRNA
This project submits the proteomic dataset of proteins interacting with the specific circular RNA Circ-018468, identified by ChIRP-MS (Chromatin Isolation by RNA Purification coupled with Mass Spectrometry). The experiment was performed using cell samples, with a negative control (non-specific probe...
ORGANISM(S): Mus Musculus 
2025-12-23 | PXD072338 |
GenomicsBerlin Neuroblastoma Dataset Update 2021
Circular RNAs (circRNAs), a noncoding RNA class originating from alternative splicing, are highly abundant in neural tissues and were shown to regulate gene expression e.g. by interacting with microRNAs and RNA-binding proteins. Neuroblastoma is an embryonal neoplasia, which arises from undifferenti...
EGAS00001005604 | EGA
TranscriptomicsHigh-resolution Profiling of RNA-Protein Interaction in Living Cells
RNA-protein interactions play essential roles in regulating a wide range of cellular processes. Profiling the protein interactome of specific RNA loci enables understanding the underlying molecular mechanisms of RNA regulatory processes. Here we describe an RNA-centric proximity labeling approach fo...
ORGANISM(S): Homo sapiens 
2025-06-04 | GSE237019 | GEO
UnknownGlobal identification of mRNA-interacting circular RNAs by CLiPPR-Seq.
Not available
S-EPMC11014417 | biostudies-literature
ProteomicsAlzheimer’s Disease-Associated circPDE4B Triggers Translation Stress Pathways
In the intricate landscape of Alzheimer’s disease (AD) pathology, circular RNAs(circRNA) are emerging as influential players, orchestrating crucial aspects of gene expression, synaptic plasticity, and neuronal function. In this study, we characterize the biological role of circPDE4B, a highly abunda...
ORGANISM(S): Homo sapiens (Human) 
2026-05-25 | PXD070615 | Pride
Gemin5 Stress Circpde4b Translation Alzheimer's disease 
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