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ProteomicsHEK293 searched with UniProt Human and ComPIL
HEK293 proteome searched with UniProt Human and ComPIL
ORGANISM(S): Homo sapiens (Human) 
2016-05-25 | PXD003896 | Pride
Hek293 Compil Metaproteomics 
UnknownComPIL 2.0: An Updated Comprehensive Metaproteomics Database.
Not available
S-EPMC7767584 | biostudies-literature
ProteomicsCompil 2.0
We designed a metaproteomic analysis method (ComPIL) to accommodate the ever-increasing number of sequences against which experimental shotgun proteomics spectra could be accurately and rapidly queried. Our objective was to create these large databases for the analysis of complex meta-samples with u...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000082943 | MassIVE
ProteomicsHuman Fecal Gut Microbiome proteomics
5 human fecal gut samples, collected and prepared for standard MudPIT data collection from healthy volunteers, searched with the ComPIL database. x3 replicates each
ORGANISM(S): human metagenome 
2016-08-03 | PXD003907 | Pride
Microbiome fecal gut bacteria colon 
ProteomicsHuman Fecal Gut Microbiome proteomics
5 human fecal gut samples, collected and prepared for standard MudPIT data collection from healthy volunteers, searched with the ComPIL database. x3 replicates each
ORGANISM(S): Human Metagenome (ncbitaxon:646099) 
2017-10-18 | MSV000081622 | MassIVE
UnknownA comprehensive and scalable database search system for metaproteomics.
Not available
S-EPMC4986259 | biostudies-literature
ProteomicsMetaproteomics of colonic microbiota unveils discrete protein functions among colitic mice and control groups
We utilized the well-characterized murine T cell transfer model of colitis to find specific alterations in the intestinal luminal proteome associated with inflammation. Mass spectrometry proteomic analysis of colonic samples permitted the identification of ~10,000-12,000 unique peptides that corre...
ORGANISM(S): human gut metagenome 
2018-07-05 | PXD006384 | Pride
Metaproteomics Mudpit 16s sequencing Rag1 -/- Microbiota Compil Murine colitis Inflammatory bowel disease T cell transfer 
UnknownMetaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms.
Not available
S-EPMC7805602 | biostudies-literature
ProteomicsUlcerative_Colitis_Human_Gut_Microbiome
Exploration of human distal gut microbiome proteins from ulcerative colitis and healthy volunteers
ORGANISM(S): Microbiota 
2021-06-04 | PXD022433 | Pride
Ibd Microbiome Human Gut Fecal Ulcerative colitis Stool Metaproteomics 
UnknownQuantitative Metaproteomics and Activity-based Protein Profiling of Patient Fecal Microbiome Identifies Host and Microbial Serine-type Endopeptidase Activity Associated With Ulcerative Colitis.
Not available
S-EPMC8941213 | biostudies-literature
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