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GenomicsPolII Rpb3 ChIP-seq data from D. melanogaster
We performed Pol II ChIP-seq experiments with 3rd instar larva salivary glands material from male, female and MSL2 RNAi D.melanogaster, as well as from S2 cell lines material. The antibody used recognizes the Rpb3 subunit of RNA Pol II irrespective of the phosphorylation state of the Rpb1 carboxy-te...
ORGANISM(S): Drosophila melanogaster 
2012-07-27 | E-MTAB-1112 | biostudies-arrayexpress
UnknownA toxic gain-of-function variant in MAPK8IP3 provides insights into JIP3 cellular roles.
Not available
S-EPMC12016931 | biostudies-literature
UnknownML314: A Biased Neurotensin Receptor Ligand for Methamphetamine Abuse.
Not available
S-EPMC4947017 | biostudies-literature
UnknownThe Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin-Remodeling Complexes.
Not available
S-EPMC5610089 | biostudies-literature
GenomicsDAC for patient-derived cell line samples
Data Access Committee EGAC00001000594
EGAC00001000594 | EGA
UnknownB Cell Receptor Affinity for Insulin Dictates Autoantigen Acquisition and B Cell Functionality in Autoimmune Diabetes.
Not available
S-EPMC5126795 | biostudies-literature
ProteomicsSerial interactome capture of the human cell nucleus
Novel RNA-guided cellular functions are paralleled by an increasing number of RNA binding proteins (RBPs). We present “serial interactome capture” (serIC), a multiple purification procedure of UV-crosslinked poly(A)-RNA-protein complexes that enables global RBP detection with maximal specificity. We...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-10-21 | MSV000080265 | MassIVE
ProteomicsIntegration of multilevel OMICs data based on the identification of regulatory modules from protein-protein interaction networks
Complex scientific experiments provide researchers with a wealth of data and knowledge from heterogeneous sources. Analyzed in its entirety, OMICs data provide a deep insight into the overall biological processes of organisms. However, the integration of data from different cellular levels (e.g., tr...
ORGANISM(S): Neosartorya fumigata (Aspergillus fumigatus) 
2018-10-25 | PXD008153 | Pride
Caspofungin Proteomics Lc-ms Aspergillus fumigatus Secretome 
ProteomicsAspergillus fumigatus melanin manipulates the cargo and kinetics of neutrophil-derived extracellular vesicles
Neutrophil-derived extracellular vesicles have regained scientific interest as potent ‘wireless’ modulators with pleiotropic effects on the immune system. A few studies have addressed their role in the context of microbial pathogenesis showing their bacteriostatic effects against Staphylococcus aure...
ORGANISM(S): Neosartorya fumigata (Aspergillus fumigatus) 
2019-05-17 | PXD005994 | Pride
Antifungal extracellular vesicles Aspergillus fumigatus Melanin Neutrophils 
TranscriptomicsGenome-wide quantification of microRNA processing efficiency from RNA-seq data
We perform polyA independent deep sequencing of chromatin associated primary transcripts across three different cell lines to obtain a global view on in vivo microRNA processing. We use these data to define a MicroProcessing Index (MPI), to quantify the cleavage efficiency of the Microprocessor comp...
ORGANISM(S): Homo sapiens 
2014-04-17 | E-GEOD-56862 | biostudies-arrayexpress
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