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ProteomicsProteomics analysis of the developing solid endosperm from Mexican Pacific Tall and Yucatan Green Dwarf coconuts (Cocos nucifera L.): an insight to carbohydrate and fatty acid metabolisms
The coconut tree (Cocos nucifera L.) is an ancient palm species that since early times had been integrally exploited due to their many benefits to the habitants of the tropical and subtropical areas (Niral and Jerard, 2018). The coconut together with the oil palm (Elaeis guineensis) and date palm (P...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-10-24 | PXD036949 | Pride
Tmt Cocos nucifera Lc-ms Carbohydrate and fatty acid metabolisms Developing solid endosperm 
TranscriptomicsTemporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing
Endosperm is a filial structure resulting from a second fertilization event in angiosperms. As an absorptive storage organ, endosperm plays an essential role in support of embryo development or seedling germination. The accumulation of carbohydrate and protein storage products in cereal endosperm pr...
ORGANISM(S): Zea mays 
2014-01-17 | E-GEOD-54131 | biostudies-arrayexpress
ProteomicsProteomes of dissected developing barley endosperm layers and microscopy identifies the starchy endosperm as prominent tissue for the storage of ER derived hordeins accompanied by the accumulation of HvPDIL1-1 and its intracellular re-localization
Barley (Hordeum vulgare) is one of the major food sources for humans and forage source for animal livestock. Barley endosperm is structured into three distinct cell layers: the starchy endosperm, which acts essentially as storage tissue for starch, the subaleurone, which is characterized by a high a...
ORGANISM(S): Hordeum vulgare (Barley) 
2018-10-01 | PXD009710 | Pride
Hvpdil 1-1 Barley caryopsis Shotgun proteomics Hordeins Endoplasmic reticulum Laser microdissection 
TranscriptomicsGenome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_fie_col_seedlings_db)
a2e_fie - h3k4me3_fie_col_seedlings_db - Epigenomic mapping in fie - Genome-wide epigenomic mapping Keywords: chip-chip 4 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-03-28 | E-GEOD-24161 | biostudies-arrayexpress
ProteomicsUsing RT-qPCR, proteomics and microscopy to unravel the spatio-temporal expression and subcellular localization of hordoindolines across development in barley endosperm
Hordeum vulgare (barley) hordoindolines (HINs), HINa, HINb1 and HINb2, are orthologous proteins of wheat puroindolines (PINs) that are small, basic, cysteine-rich seed-specific proteins and responsible for grain hardness. Grain hardness, is, next to its protein content, a major quality trait. In ba...
ORGANISM(S): Hordeum vulgare (Barley) 
2018-07-02 | PXD009708 | Pride
Spatio-temporal  laser microdissection  endosperm  label-free shotgun proteomics  rt-qpcr  reference genes  end-product quality Golden promise  protein bodies  grain hardness Barley caryopsis  hordoindoline 
TranscriptomicsGenome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k27me3_fie_col_seedlings_db)
a2e_fie - h3k27me3_fie_col_seedlings_db - Epigenomic mapping in fie - Genome-wide epigenomic mapping Keywords: chip-chip 4 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-03-28 | E-GEOD-24159 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant (h3k4me3_wt_col_seedlings_db)
a2e_fie - h3k4me3_wt_col_seedlings_db - Epigenomic mapping in fie - Genome-wide epigenomic mapping Keywords: chip-chip 4 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-03-28 | E-GEOD-24162 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of H3K27me3 and H3K4me3 deposition in the fie mutant
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2011-03-28 | E-GEOD-24163 | biostudies-arrayexpress
GenomicsActive DNA demethylation in plant companion cells reinforces transposon methylation in gametes
The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes DNA demethylation prior to fertilization, but the targeting preferences and biological significance of this process remain unclear. Here, we show that active DNA demethylation mediated by the DEMETER DNA glycosylase acco...
ORGANISM(S): Arabidopsis thaliana 
2012-09-21 | E-GEOD-38935 | biostudies-arrayexpress
ProteomicsIn vivo, Quantitative label free proteomics and microscopy analysis highlights the central role of the endomembrane system during barley grain filling development.
Abstract Barley is a cereal crop of worldwide importance for brewing industry, animal and in lesser extent humannutrition. Grain development is a tightly controlled process which predominantly contributes to the final grain quality. To understand molecular changes occurring in the early seed develop...
ORGANISM(S): Hordeum vulgare (Barley) 
2018-07-02 | PXD009722 | Pride
Microscopy Shotgun proteomics Endomembrane system. barley caryopsis development Escrt Qrt-pcr 
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