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ProteomicsZebrafish Deyolking Survey - A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos
Deyolking, the removal of the most abundant protein from the zebrafish (Danio rerio) embryo, is a common technique for in-depth exploration of proteome-level changes in vivo due to various environmental stressors or pharmacological impacts during embryonic stage of development. However, the effect o...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2015-10-14 | PXD002124 | Pride
Bioinformatics Label-free proteomics Zebrafish Deyolking 
ProteomicsZebrafish early embryos isolated nuclei and whole blastomeres LC-MSMS
Nuclear pore complex (NPC) structure and maturity changed during early development before MBT in zebrafish embryos. Aiming to further confirm the difference of NPCs among different stages during MZT, we first isolated nuclei from 32-cell and 512-cell stage embryos as most zygotic genes have not been...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2023-08-25 | PXD017896 | Pride
Whole blastomeres Lc-msms Isolated nuclei Zebrafish 
UnknownProteomics Analysis of Early Developmental Stages of Zebrafish Embryos.
Not available
S-EPMC6940819 | biostudies-literature
UnknownFlat mount preparation for whole-mount fluorescent imaging of zebrafish embryos
Not available
S-EPMC10373579 | biostudies-literature
GenomicsZic3 interacts with distant regulatory elements to regulate zebrafish developmental genes
Zic3 regulates early embryonic patterning in vertebrates. Its loss-of-function disrupts gastrulation, left-right patterning, and neurogenesis. We use the zebrafish as a model to study the developmental role of Zic3 in vivo. Using a combination of two genomics approaches – ChIP-seq and microarray, we...
ORGANISM(S): Danio rerio 
2014-02-27 | E-GEOD-41458 | biostudies-arrayexpress
GenomicsDevelopmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Danio rerio 
2015-02-13 | E-GEOD-52706 | biostudies-arrayexpress
GenomicsDevelopmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos (MeDIP-seq)
DNA methylation undergoes dynamic changes during development and cell differentiation. Recent genome-wide studies discovered that tissue-specific differentially methylated regions (DMRs) often overlap tissue-specific distal cis-regulatory elements. However, developmental DNA methylation dynamics of ...
ORGANISM(S): Danio rerio 
2015-02-13 | E-GEOD-52703 | biostudies-arrayexpress
GenomicsDevelopmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos (MRE-seq)
DNA methylation undergoes dynamic changes during development and cell differentiation. Recent genome-wide studies discovered that tissue-specific differentially methylated regions (DMRs) often overlap tissue-specific distal cis-regulatory elements. However, developmental DNA methylation dynamics of ...
ORGANISM(S): Danio rerio 
2015-02-13 | E-GEOD-52704 | biostudies-arrayexpress
ProteomicsProteomics of zebrafish early somites
The segmented pattern of the vertebral column and musculature in vertebrate embryos is established during somitogenesis. Here, using the model animal zebrafish, we employed Data-Independent Acquisition (DIA) to capture the proteomics change at the early stages of somite development.
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2025-10-13 | PXD058516 | Pride
Somites Zebrafish 
ProteomicsZebrafish embryo Kac - Global proteomic analysis of lysine acetylation in zebrafish (Danio rerio) embryos
Zebrafish (Danio rerio) model system have used widespread vertebrate investigations for genetic and cell biological analyses, and is suitable for small molecular screens such as chemical, toxicity and drug in order to use for human diseases and drug discovery . Recently, These powerful zebrafish mod...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2016-10-10 | PXD003455 | Pride
Embryos Ptms Lysine acetylation Zebrafish 
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