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TranscriptomicsProfiling the transcriptional response upon deletion of PUN1
Yeast filamentous growth is a stress response to conditions of nitrogen deprivation, wherein yeast colonies form pseudohyphal filaments of elongated and connected cells. As proteins mediating adhesion and transport are required for this growth transition, the protein complement at the yeast cell pe...
ORGANISM(S): Saccharomyces cerevisiae 
2010-02-17 | E-GEOD-20351 | biostudies-arrayexpress
ProteomicsCharacterization of differentially abundant proteins among Leishmania (Viannia) braziliensis strains isolated from atypical or typical lesions
Leishmania (Viannia) braziliensis is the main etiological agent of cutaneous and mucocutaneous leishmaniasis in Latin America. Reports have described non-ulcerated atypical tegumentary leishmaniasis cases caused by L. braziliensis in several regions of the world, including in patients from the Xacri...
ORGANISM(S): Leishmania braziliensis 
2022-02-11 | PXD029995 | Pride
Leishmania braziliensis Abundance Atypical Tmt. Label based Proteome 
TranscriptomicsComparative Transcript Abundance in E. Coli Degradosome Mutants and their Parental Strains
Comparative transcript abundance in E. Coli degradosome mutants and their parental strains. Abstract: RNase E, an essential endoribonuclease of Escherichia coli, interacts through its C-terminal region with multiple other proteins to form a complex termed the RNA degradosome. To investigate the degr...
ORGANISM(S): Escherichia coli 
2006-01-05 | E-GEOD-3977 | biostudies-arrayexpress
UnknownThe Low-Abundance Plasma Proteome Reveals Differentially Abundant Proteins Associated with Breast Implant Capsular Contracture: A Pilot Study.
Not available
S-EPMC11348101 | biostudies-literature
ProteomicsDifferentially abundant proteins associated with heterosis in the primary roots of popcorn
Although heterosis has significantly contributed to increases in worldwide crop production, the molecular mechanisms regulating this phenomenon are still unknown. In the present study, we used a comparative proteomic approach to explore hybrid vigor via the proteome of both the popcorn L54 ♀ and P8 ...
ORGANISM(S): Zea mays (Maize) 
2018-05-17 | PXD009436 | Pride
Nano-lc-esi-ms/ms Progenesis Synapt g2 si Heterosis Popcorn Non-additive effect Shotgun proteomics 
ProteomicsThe low abundance plasma proteome reveals changes associ-ated with breast implant capsular contracture
Capsular contracture (CC) is one of the most common post-operative complication associated with breast-implant associated infections. The mechanisms that lead to CC remain poorly understood. Plasma is an ideal biospecimen for early proteomics biomarker discovery. However, as higher-abundant proteins...
ORGANISM(S): Homo sapiens (Human) 
2024-10-17 | PXD044649 | Pride
Proteomics Tmt Breast implants Capsular contracture Human plasma 
ProteomicsLow-Abundance Serum Protein Biomarker Candidates for HCC in Patients with Liver Cirrhosis
In this study, we employed both untargeted and targeted analysis of low abundance serum proteins to identify potential biomarkers for HCC. We employed a two-phase proteomics approach to identify low abundance serum proteins as potential biomarkers for HCC.The first phase involved DDA-based untargete...
ORGANISM(S): Homo sapiens (Human) 
2026-06-15 | PXD061721 | Pride
Nano-lc-ms/ms Low abundance protein Serum Liliver cancer Biomarker 
ProteomicsIdentification of differentially expressed proteins between fused and open sutures in sagittal nonsyndromic craniosynostosis during suture development by quantitative proteomic analysis
Craniosynostosis (CS) is a common birth defect due to the premature fusion of one or more cranial sutures. It manifests with abnormal skull shape and is associated with significant morbidities such as increased intracranial pressure, vision problems, and learning disabilities. Nonsyndromic craniosyn...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-03-20 | MSV000085130 | MassIVE
ProteomicsMulti-parameter optimization of two common proteomics quantification methods for quantifying low-abundance proteins
To improve the sensitivity and accuracy of label-free quantification and tandem mass tags (TMT) labeling in quantifying low-abundance proteins, multi-parameter optimization was carried out using a complex 2-proteome artificial sample mixture for a series of steps from sample preparation to data anal...
ORGANISM(S): Homo Sapiens Mus Musculus 
2018-11-02 | PXD011574 |
UnknownCharacterization of human tear proteome reveals differentially abundance proteins in thyroid-associated ophthalmopathy.
Not available
S-EPMC9285480 | biostudies-literature
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