Dixon J J - OmicsDI

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Unknown (1562)
Transcriptomics (27)
Proteomics (18)
Genomics (17)
Metabolomics (6)
Models (4)
Genomic (1)

Organisms

Homo sapiens (25)
Schizophyllum commune H4-8 (16)
Mycobacterium tuberculosis SP7 (16)
Oryza sativa Japonica Group (16)
Candidatus Endoriftia persephonae (16)
Mycobacterium tuberculosis SP10 (16)
Mycobacterium tuberculosis SP13 (16)
Mycobacterium tuberculosis SP22 (16)
Chlamydomonas reinhardtii (16)
Pyricularia oryzae P131 (16)
Enterococcus mundtii CRL35 (16)
Oncorhynchus tshawytscha (16)
Pseudomonas canadensis (16)
Strongylocentrotus purpuratus (16)
Influenza A virus (A/California/04/2009(H1N1)) (16)
Homo (16)
Pseudomonas aeruginosa PAO1H2O (16)
Human alphaherpesvirus 1 strain 17 (16)
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Arachis hypogaea (1)

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biostudies-arrayexpress (30)
pride (16)
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Plasmodium falciparum malaria (2)
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Mass Spectrometry (16)
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Instrument Platform

Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
LTQ (2)
GC-TOF-MS (1)
GCT Premier (Waters) (1)
Direct infusion MS - alternating (1)
Liquid Chromatography MS - positive - direct infusion (1)
Direct infusion MS - positive (1)
API 5500 QTRAP (AB Sciex) (1)
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2022 (7)
2010 (6)
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2017 (4)
2011 (4)
2008 (4)
2005 (3)
2019 (3)
2018 (3)
2012 (3)
2021 (3)
2013 (2)
2007 (2)
2016 (2)
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2015 (1)
2009 (1)
2025 (1)
2023 (1)
2020 (1)

UNIPROT ID/AC

P92973 (1)
P10687 (1)
Q9JID2 (1)
Q9LKL2 (1)

CHEBI ID

CHEBI:4167 (2)
CHEBI:16199 (2)
CHEBI:17754 (2)
CHEBI:16113 (2)
CHEBI:17053 (2)
CHEBI:17191 (2)
CHEBI:15428 (2)
CHEBI:30769 (2)
CHEBI:16958 (2)
CHEBI:28300 (2)
CHEBI:16449 (2)
CHEBI:78320 (2)
CHEBI:16811 (2)
CHEBI:25017 (2)
CHEBI:25078 (1)
CHEBI:29108 (1)
CHEBI:33699 (1)
CHEBI:139063 (1)
CHEBI:139062 (1)
CHEBI:139061 (1)
CHEBI:139060 (1)
CHEBI:77347 (1)
CHEBI:77345 (1)
CHEBI:74110 (1)
CHEBI:88816 (1)
CHEBI:132293 (1)
CHEBI:29986 (1)
CHEBI:84250 (1)
CHEBI:139058 (1)
CHEBI:16148 (1)

Metabolite Name

Unknown 98 (1)
Guanosine_2321_2TMS (1)
Unknown 97 (1)
Adenosine_1805_4TMS (1)
Inosine_2818_4TMS (1)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]-:6 (1)
Unknown 95 (1)
Unknown 94 (1)
Phenylethanolamine triTMS (1)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]-:5 (1)
Unknown 93 (1)
Lactose_2567_8TMS (1)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]-:4 (1)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]-:3 (1)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]-:2 (1)
Scopolin, tetra(trimethylsilyl)- (1)
Unknown 92 (1)
Unknown 91 (1)
Pyroglutamic acid_1731_3TMS:2 (1)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester:4 (1)
Pseudouridine_2404_4TMS (1)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester:3 (1)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester:2 (1)
Oleic acid_2310_1TMS (1)
Unknown 87 (1)
Octadecanoic acid_2292_1TMS (1)
Unknown 84 (1)
Unknown 83 (1)
Unknown 82 (1)
9H-Purin-6-amine, N,9-bis(trimethylsilyl)- (1)

IsPrivate

False (4)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (17)
ChIP-seq (3)
Unknown experiment type (2)
RNA-seq of coding RNA from single cells (2)
Baseline (1)
RNAi profiling by array (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (183)
2023 (169)
2021 (169)
2025 (162)
2024 (144)
2020 (100)
2019 (90)
2018 (89)
2017 (68)
2016 (64)
2015 (63)
2014 (49)
2012 (39)
2011 (34)
2026 (32)
2013 (31)
2009 (27)
2010 (25)
2008 (22)
2007 (15)
2006 (6)
2005 (4)
2004 (2)
2003 (2)
2001 (1)
2000 (1)
1995 (1)

Lab affiliation

Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla California 92037 USA (1)
Applied Bioinformatics of Cancer University of Edinburgh Cancer Research Centre Institute of Genetics and Molecular Medicine Edinburgh, United Kingdom (1)
Department of Medical Genetics, University of British Columbia, Vancouver, Canada (1)
Sir Peter MacCallum Department of Oncology, University of Melbourne, Australia; Peter MacCallum Cancer Centre, Melbourne, Australia (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Palo Alto, CA USA (1)
Columbia University Department of Biological Sciences and Department of Chemistry (1)
Departments of Medicine (Oncology) and of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, USA Stanford Cancer Institute, Stanford, CA, USA (1)
Laboratory for Biological Mass Spectrometry, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK (1)
Research Centre for Infectious Diseases, School of Biological Sciences, University of Adelaide, Adelaide 5005, Australia (1)
Associate Professor Dept. of Pathology and Laboratory Medicine HSRF 218, University of Vermont Larner College of Medicine Burlington, Vermont, 05405, USA (1)
Roivant sciences, Discovery Platform, Advanced simulations, New York City, NY (1)
VP, Advanced Simulations, Roivant Discovery, Inc (1)
University of Manitoba Department of Physiology & Pathophysiology St. Boniface Hospital Albrechtsen Research Centre Institute of Cardiovascular Sciences (1)
LAMFU, Biological Science department,universidad de los Andes,Colombia Molecular microbiology,Utrecht University, The Netherlands (1)
Walter and Eliza Hall Institute of Medical Research and The University of Melbourne (1)
University of British Columbia (1)

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NUDCD3 deficiency disrupts V(D)J recombination to cause SCID/Omenn syndrome

Inborn errors of T cell development present a pediatric emergency in which timely curative therapy is informed by molecular diagnosis. In 9 affected patients across 3 consanguineous kindreds, we detected homozygosity for a single deleterious missense variant in the gene NudC domain containing 3 (NUD...

ORGANISM(S): Homo sapiens (Human)

2024-09-27 | PXD035840 | Pride

Comparison of Dixon Sequences for Estimation of Percent Breast Fibroglandular Tissue.

Not available

S-EPMC4806997 | biostudies-literature

Fat suppression for ultrashort echo time imaging using a single-point Dixon method.

Not available

S-EPMC6476675 | biostudies-literature

Leveraging dixon-based magnetic resonance imaging for pelvic bone marrow imaging in radiotherapy.

Not available

S-EPMC12513058 | biostudies-literature

Temporal characterization of serum metabolite signatures in lung cancer patients undergoing treatment

Lung cancer causes more deaths in men and women than any other cancer related disease. Currently, few effective strategies exist to predict how patients will respond to treatment. We evaluated the serum metabolomic profiles of 25 lung cancer patients undergoing chemotherapy ± radiation to evaluate t...

2017-01-19 | MTBLS200 | MetaboLights

Dixon-VIBE Deep Learning (DIVIDE) Pseudo-CT Synthesis for Pelvis PET/MR Attenuation Correction.

Not available

S-EPMC6910626 | biostudies-literature

Hybrid ZTE/Dixon MR-based attenuation correction for quantitative uptake estimation of pelvic lesions in PET/MRI.

Not available

S-EPMC5877454 | biostudies-literature

Feasibility of free-breathing quantitative myocardial perfusion using multi-echo Dixon magnetic resonance imaging.

Not available

S-EPMC7392760 | biostudies-literature

Feasibility of simultaneous whole-brain imaging on an integrated PET-MRI system using an enhanced 2-point Dixon attenuation correction method.

Not available