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MetabolomicsGut microflora alleviate immune response during E.coli-induced bladder cystits via AhR/MANF activation

In recent years, with the deepening of research on intestinal microbiota, we found intestinal microbiota plays an important role in host immune regulation and barrier maintenance through cross-talk between the microbiota and the host. New evidence suggests that disruption of the fragile balance w...

2023-07-11 | MTBLS5572 | MetaboLights
TranscriptomicsE.coli response to Antimicrobial Arylamides
We treated logarithmically growing cultures of E.coli with a sub-lethal dose of an antimicrobial arylamide compound (PMX 10070) and Polymyxin B sulfate to measure transcriptional responses in an effort to understand mechanism of action Treated samples were assayed at time = 20min and time = 60min af...
ORGANISM(S): Escherichia coli 
2011-08-02 | E-GEOD-31140 | biostudies-arrayexpress
TranscriptomicsWild type E.coli SE15 vs. LuxS mutant E.coli SE15
Transcriptional profiling of E.coli SE15 comparing wild type E.coli SE15 with Autoindecur 2 synthesis gene LuxS mutnat E.coli SE15. E.coli SE15 is isolated from indwelling catheter of urinary tract infected patient. Examine change of quorum sensing related gene by deleting autoinducer 2 synthesis g...
ORGANISM(S): Escherichia coli SE15 
2013-08-02 | E-GEOD-49474 | biostudies-arrayexpress
ProteomicsIn-depth and reproducibly quantitation of benchmark dataset consiting of 20 files
We prepared a benchmark dataset where the various levels of spikeed-in E. Coli proteome that true fold change (i.e. 1 fold, 1.5 fold, 2 fold, 2.5 fold and 3 fold) and true identities of positives/negatives (i.e. E.Coli proteins are true positives while Human proteins are true negatives) are known. T...
ORGANISM(S): Homo sapiens (Human) 
2017-04-20 | PXD005590 | Pride
Lc-ms Human E.coli 
TranscriptomicsE.coli response to Antimicrobial Arylamides
We treated logarithmically growing cultures of E.coli with a sub-lethal dose of an antimicrobial arylamide compound (PMX 10070) and Polymyxin B sulfate to measure transcriptional responses in an effort to understand mechanism of action Treated samples were assayed at time = 20min and time = 60min af...
ORGANISM(S): Escherichia coli 
2011-08-03 | GSE31140 | GEO
ModelsHaiman2020 Functional enzyme states in the E.coli glycolytic proteome metabolic model
Dynamic model utilizing mass action kinetics to compute the functional states of the E.coli glycolytic proteome, providing insight into distribution of catalytic activities of enzymes for different metabolic states. Glycolytic model is derived from the iML1515 E.coli constraint-based reconstruction ...
2024-10-09 | MODEL2012150003 | BioModels
ProteomicsTotal proteome analysis of engineered/adapted E.coli strains with glucose/xylose co-utilization ability
This project was about developing a bacterial strain that could consume a mixture of glucose and xylose simultaneously with higher ethanol productivity. In this study, an ethanologenic strain (SSK42) was made deficient in Carbon Catabolite Repression (CCR) by deleting the ptsG gene encoding EIIBCGlc...
ORGANISM(S): Escherichia coli 
2022-10-15 | PXD033577 | Pride
Sugar mixture Orbitrap lumos E.coli b Co-utilization 
TranscriptomicsTranscription profiling of pNCF (non-conjugative factor of F plasmid) carrying E.coli biofilm
Three E.coli affymetrix antisense arrays were used to examine the global gene expression of pNCF carrying E.coli biofilm. The pNCF is the derivative of only 65 kb non-conjugative factor of F plasmid. It was introduced to E.coli MG1655 strains before prepare the biofilm samples. The biofilms were cul...
ORGANISM(S): Escherichia coli 
2007-09-01 | E-MEXP-1145 | biostudies-arrayexpress
TranscriptomicsRNA-Seq analysis of E.coli, under multiple growth conditions
The goal of the study is to obtain rna concentrations of E.coli under different growth conditions including growth phase carbon source and salt stresses of Mg+2 and Na+
ORGANISM(S): Escherichia coli B str. REL606 
2017-01-27 | GSE94117 | GEO
TranscriptomicsCharacterisation of Modular Reponse of non-pathogenic E.coli K12 MG1655 Response to acid adaptation, part B
To study the dynamics of acid adaptation in E.coli at pH5.5 as opposed to that at pH7, samples were collected from a steady-state system for transcriptomics. Keywords: time course Single channel hybridisation were carried out using cy5 dye. Samples were collected from steady state system at pH7 and...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-09-01 | E-GEOD-13179 | biostudies-arrayexpress
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