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ProteomicsProteomic analysis dissects the impact of nodulation and biological nitrogen fixation on Vicia faba root nodule physiology
Symbiotic nitroegn fixation in functional (Fix+) and non-functional (Fix-) nodules of Vicia faba infected with Rhizobium leguminosarum was investigated using label-free shotgun tandem MS. Proteins involved in symbiotic nitrogen fixation and maintenance of the symbiosis were identified.
ORGANISM(S): Rhizobium leguminosarum bv. viciae Vc2 Vicia faba 
2018-05-30 | PXD008548 | Pride
Symbiotic nitrogen fixation Root Vicia faba Rhizobium leguminosarum Nodule 
ProteomicsProtein Interaction Patterns in Arabidopsis thaliana Leaf Mitochondria Change in Response to Illumination
Light is the most important cue for plant metabolism since its presence enables photosynthesis. Mitochondria respond to light conditions by adjusting flow through the citric acid cycle and the respiratory chain to support photosynthesis in the light and provide the cell with ATP in the light and in ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-05-17 | PXD019253 | Pride
Oxphos Plant mitochondria Protein complexes Tca-cycle Diurnal cycle Complexome profiling 
ProteomicsMULocDeep: An Interpretable Deep Learning Model for Protein Localization Prediction with Sub-organelle Resolution
Prediction of protein localization plays an important role in understanding protein function and mechanism. A deep learning-based localization prediction tool (“MULocDeep”) assessing each amino acid’s contribution to the localization process provides insights into the mechanism of protein sorting an...
ORGANISM(S): Solanum tuberosum (Potato) Arabidopsis thaliana (Mouse-ear cress) Vicia faba var. faba 
2022-02-15 | PXD019987 | Pride
Protein localization prediction Shotgun proteomics Protein targeting Plant mitochondria isolation Deep learning 
ProteomicsSingle organelle function and organization as estimated from Arabidopsis mitochondrial proteomics
Aiming at defining the protein content and composition of a single mitochondrion of Arabidopsis thaliana, shotgun analyses were performed on purified mitochondria from cultured heterotrophic Arabidopsis cells. Based on microscopic observations on the size of mitochondria, as well as biochemical prop...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-09-11 | PXD014292 | Pride
Plant mitochondria 
ProteomicsPPR proteins in Arabidopsis mitoribosomes
Investigation of the protein composition of mitoribosomal subunits in Arabidopsis thaliana by complexome profiling
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-04-30 | PXD011088 | Pride
Mitoribosomal subunits Ppr proteins Mitoribosomes Complexome profiling 
TranscriptomicsTranscription profiling of Arabidopsis shoots, roots and cell cultures
Microarray analysis of the changes in transcript abundance in cell culture and shoot
ORGANISM(S): Arabidopsis thaliana 
2008-07-19 | E-ATMX-31 | biostudies-arrayexpress
ProteomicsProteomic investigation of seed development under high nitrate supply in plants lacking Pyrroline-5-carboxylate dehydrogenase
Free proline is an amino acid known to have many functions in plants, particularly in stress adaptation and development. Its metabolism is well known, but its exact role in plant physiology has remained elusive. Proline catabolism is ensured by the sequential action of the enzymes Proline dehydrogen...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2024-06-10 | MSV000094979 | MassIVE
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