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OtherThe Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components.
Data from ProteomeXchange, PXD ID: PXD002113. File: 130514_LA_C_92_SAX8.mzml. Published as part of PLoS Pathog. 2015 Jun 4;11(6):e1004883 . From the Abstract: {{i}} Chlamydia trachomatis is an important human pathogen that replicates inside the infected host cell in a unique vacuole, the inclusion....
ORGANISM(S): Homo_sapiens_viruses, Human_female, Chlamydia_trachomatis_l2b_uch_1_proctitis, Chlamydia_trachomatis_l2c 
GPM32310020401 | GPMDB
Resource Reanalysis 
ProteomicsC. trachomatis L2 inclusion proteome
Chlamydia trachomatis is an important human pathogen that replicates inside the infected host cell in a unique vacuole, the inclusion. The formation of this intracellular bacterial niche is essential for productive Chlamydia infections. Despite its importance for Chlamydia biology, a holistic view o...
ORGANISM(S): Homo sapiens (Human) 
2015-06-08 | PXD002113 | Pride
Chlamydia Inclusion Compartment Trachomatis Vacuole Lc-ms/ms 
GenomicsActivation and repression by oncogenic Myc shapes tumour-specific gene expression profiles
In mammalian cells, the Myc oncoprotein binds to thousands of promoters. During mitogenic stimulation of primary lymphocytes, Myc promotes an increase in expression of virtually all genes. In contrast, Myc-driven tumour cells differ from normal cells in expression of specific sets of up- and downreg...
ORGANISM(S): Homo sapiens 
2014-07-10 | E-GEOD-44672 | biostudies-arrayexpress
GenomicsNGS data of Nicotiana benthamiana 16c plants after CRISPR/Cas9 gene editing
Provided data came from a detailed study on Nicotiana benthamiana 16c plants where we use Tobacco Rattle Virus (TRV) as a molecular switch to change the chromatin state of a reporter gene (P35S::GFP) from an actively transcribed to a transcriptionally silenced state. Our approach enables us to inter...
ORGANISM(S): Nicotiana benthamiana 
2022-05-04 | E-MTAB-10256 | biostudies-arrayexpress
ProteomicsHuman cerebrospinal fluid analysis by data-independent analysis The Cerebrospinal fluid samples were denaturated and reduced.
Cerebrospinal fluid samples of patients with Parkinson’s disease and healthy controls were used in this study. After tryptic digestion, all samples were spiked with indexed retention time (iRT) peptides and were measured using a DIA mass spectrometry approach.
ORGANISM(S): Homo sapiens (Human) 
2021-09-09 | PXD022234 | Pride
Human Dia Cerebrospinal fluid Parkinsons disease 
ProteomicsThe response of the root proteome to the synthetic strigolactone GR24 in Arabidopsis
Strigolactones are plant metabolites that act as phytohormones and rhizosphere signals. Whereas most research on unraveling the action mechanisms of strigolactones is focused on plant shoots, we investigated proteome adaptation during strigolactone signaling in the roots of Arabidopsis thaliana. Thr...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-06-20 | PXD003879 | Pride
Root responses to strigolactone treatment 
ProteomicsThe response of the root proteome to the synthetic strigolactone GR24 in Arabidopsis
Strigolactones are plant metabolites that act as phytohormones and rhizosphere signals. Whereas most research on unraveling the action mechanisms of strigolactones is focused on plant shoots, we investigated proteome adaptation during strigolactone signaling in the roots of Arabidopsis thaliana. Thr...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-02-28 | PXD004269 | Pride
Root responses to strigolactone treatment 
GenomicsRelapsed and Primary Neuroblastoma DAC
Data Access Committee EGAC00001000373
EGAC00001000373 | EGA
Genomicsena-DATASET-UKEssen-09-09-2015-10:54:33:815-144 - samples
In this dataset, 16 trios- primary tumor, relapse and corresponding normals- for patients with neuroblastoma are provided. For one patient, more than one relapse was available for the analyses.
EGAD00001001607 | EGA
GenomicsGenomes of Relapsing Neuroblastoma
Neuroblastoma is a malignancy of the developing sympathetic nervous system that is often lethal when relapse occurs, but the molecular mechanisms behind this process are poorly defined. We here used whole-exome sequencing, mRNA expression, array CGH and DNA methylation analysis to holistically chara...
EGAS00001001387 | EGA
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