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TranscriptomicsResponse of Escherichia coli to acetate concentration during growth on glucose
E. coli MG1655 was grown on M9 minimal medium supplemented with 15mM glucose and either 0, 10, 50 or 100 mM acetate. Transcriptomic analysis from exponential growing cells was performed using Agilent microarray A-MEXP-2232. This work was done with the help of students during practicals. Consequentl...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2020-08-21 | E-MTAB-9086 | biostudies-arrayexpress
TranscriptomicsThe genomic landscape of pediatric T-cell acute lymphoblastic leukemia reveals novel X-linked somatic mutations associated with apoptosis resistance. [RNA-Seq]
Background. T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive hematological malignancy with a dismal prognosis. It represents 15% of pediatric ALL and has a threefold higher incidence among males. T-cell transformation is a multi-step process involving cooperating events leading to altere...
ORGANISM(S): Homo sapiens 
2016-03-02 | E-GEOD-78785 | biostudies-arrayexpress
MetabolomicsBioinspired Rhamnolipid Protects Wheat Against Zymoseptoria tritici Through Mainly Direct Antifungal Activity and Without Major Impact on Leaf Physiology

Rhamnolipids (RLs), glycolipids biosynthesized by the Pseudomonas and Burkholderia genera, are known to display various activities against a wide range of pathogens. Most previous studies on RLs focused on their direct antimicrobial activity, while only a few reports described t...

2022-06-21 | MTBLS4542 | MetaboLights
TranscriptomicsRNA-Seq data of terminal differentiated cells in Dictyostelium discoideum
The intent of the experiment was to gather transcriptomic data from terminally differentiated cell types --spore, stalk, and cup cells-- in a simple multicellular model system, Dictyostelium discoideum, in order to characterize the cell-type specific gene expression patterns. Specifically, we dissoc...
ORGANISM(S): Dictyostelium discoideum 
2019-01-31 | E-MTAB-7215 | biostudies-arrayexpress
UnknownRacial/ethnic and geographic differences in polybrominated diphenyl ether (PBDE) levels across maternal, placental, and fetal tissues during mid-gestation.
Not available
S-EPMC7376153 | biostudies-literature
ProteomicsMS-CETSA discovery of target engagement by Darapladib
We used the lysate MS-CETSA Isothermal Dose-Response (ITDR) protocol to discover the interactions of Darapladib with proteins in Plasmodium falciparum and human red blood cells proteomes.
ORGANISM(S): Plasmodium Falciparum 
2022-05-18 | PXD029803 | JPOST Repository
TranscriptomicsAstrocytes’ response to Flunarizine combined with irradiation
Bulk RNAseq analysis of mRNA content of human primary astrocytes irradiated with 10 Gy and/or treated with Flunarizine 10uM.
ORGANISM(S): Homo sapiens 
2025-08-19 | E-MTAB-15215 | biostudies-arrayexpress
ProteomicsEfficiency of the purification protocols on complex matrices: biofilm, mouse liver and soil
In gel-free experimental workflows, protein purification often starts with a precipitation stage using trichloroacetic acid (TCA). In presence of TCA, proteins precipitate in a stable molten globule state making the pellet difficultto solubilize in aqueous buffer for proteolytic digestion and MS ana...
ORGANISM(S): Mus musculus (Mouse) Porphyra purpurea Trichoderma cf. viride DIS 217I Synechocystis sp. CCALA 700 Microchaete diplosiphon CCALA 811 
2017-11-30 | PXD008110 | Pride
Mouse liver Biofilm Soil Lc-ms/ms 
ProteomicsProteomic analysis of bronchial smooth muscle cells extracellular vesicles
The main objective of CHARMACOMA is to explore the capacity of the severe asthmatic bronchial smooth muscle to modify bronchial epithelium physiology from a metabolic point of view.
ORGANISM(S): Homo sapiens (Human) 
2025-11-26 | PXD055968 | Pride
Evs Asthma 
ProteomicsMyeloid cell recruitment propels right ventricular dysfunction in HFpEF via sterile inflammation
This project characterizes chamber-specific proteomic remodeling in a murine three-hit HFpEF model that develops right ventricular dysfunction, using chow, hypoxia alone, and HFD+L-NAME as control conditions. The three-hit model (hypoxia, high-fat diet, and L-NAME) recapitulates key features of huma...
ORGANISM(S): Mus musculus (Mouse) 
2026-09-07 | PXD074772 | Pride
Heart Mouse Hfpef Hypoxia 
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