Glass-chip - OmicsDI

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Transcriptomics (636)
Genomics (383)
Unknown (236)
Proteomics (22)
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Homo sapiens (219)
Drosophila melanogaster (168)
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Repository

biostudies-arrayexpress (963)
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pride (17)
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Disease

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Neurological disease (1)
Benign adenoma (1)
Chronic myelogenous leukemia (1)
IgG negative for EV71 and CA21 (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (2)
Mass spectrometry (1)
MSE (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (67)
BGISEQ-500 (55)
DNBSEQ-T7 (41)
NextSeq 500 (29)
Illumina HiSeq 4000 (17)
Illumina HiSeq 2000 (16)
NextSeq 550 (11)
NextSeq 2000 (10)
Illumina Genome Analyzer IIx (5)
Axon GenePix 4000B scanning hardware (5)
N/A (5)
Illumina NovaSeq X (4)
10x Genomics Chromium Controller (4)
Illumina HiSeq 2500 (4)
NextSeq 1000 (3)
Illumina MiSeq (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (2)
10X Genomics reagent kit (2)
Element AVITI (2)
None (2)
ScanArray Lite [PerkinElmer] (2)
G2505A DNA microarray scanner [Agilent] (2)
ScanArray Express HT [PerkinElmer] (2)
GenePix 4000B [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
NA (2)
Gentle MACS; BD FACS Aria III (1)
ICELL8 MultiSample NanoDispenser (1)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)

Publication Date

2013 (205)
2010 (92)
2014 (78)
2026 (65)
2025 (58)
2023 (53)
2015 (52)
2011 (44)
2016 (42)
2008 (41)
2012 (36)
2009 (35)
2007 (32)
2021 (31)
2024 (27)
2022 (21)
2020 (14)
2006 (14)
2005 (14)
2019 (13)
2017 (10)
2004 (10)
2018 (6)
2003 (1)

CHEBI ID

CHEBI:15375 (1)
CHEBI:85465 (1)
CHEBI:125449 (1)
CHEBI:28664 (1)
CHEBI:70869 (1)
CHEBI:74767 (1)
CHEBI:68467 (1)
CHEBI:30818 (1)
CHEBI:48517 (1)
CHEBI:44933 (1)
CHEBI:5100 (1)
CHEBI:44302 (1)
CHEBI:8654 (1)
CHEBI:90344 (1)
CHEBI:17439 (1)
CHEBI:1670 (1)
CHEBI:71012 (1)
CHEBI:84644 (1)
CHEBI:82952 (1)
CHEBI:85095 (1)
CHEBI:30817 (1)
CHEBI:45441 (1)
CHEBI:17768 (1)
CHEBI:40521 (1)
CHEBI:18208 (1)
CHEBI:46905 (1)
CHEBI:68441 (1)
CHEBI:21553 (1)
CHEBI:18095 (1)
CHEBI:35704 (1)

Metabolite Name

4-Aminobutyric acid betaine (1)
Glutaryl-carnitine (1)
N-Acetyl-leucine (1)
N-Acetyl-glutamine (1)
2-O-Methylinosine (1)
Gamma-Glutamyl-cysteine (1)
Pipecolic acid betaine (1)
Trans-Urocanic acid (1)
N1-Methylguanosine (1)
Cis-Urocanic acid (1)
Proline-Hydroxyproline (1)
3-Ureidoisobutyric acid (1)
Octenoyl-carnitine (1)
Oleoyl-carnitine (1)
Cyanocobalamin (1)
Palmitoyl-carnitine (1)
N-Acetyl-serine (1)
Stearoyl-carnitine (1)
N1-Methyladenosine (1)
Methionine sulfone (1)
N-Methyl-proline (1)
N-Acetyl-D-galactosamine (1)
Valeryl-carnitine (1)
7,8-Dihydrobiopterin (1)
Propionyl-carnitine (1)
Decanoyl-carnitine (1)
Butyryl-carnitine (1)
N2-Acetyl-lysine (1)
O-Hydroxyhippuric acid (1)
N-Acetyl-ornithine (1)

First Public Date

2014 (33)
2023 (4)
2017 (3)
2025 (2)
2019 (2)
2013 (2)
2024 (1)
2022 (1)
2018 (1)
2015 (1)

Classification

bacteria (8)

Study type

Transcription profiling by array (345)
ChIP-seq (246)
DNA-seq (78)
ChIP-chip by tiling array (70)
RNA-seq of coding RNA from single cells (48)
RNA-seq of coding RNA (46)
ChIP-chip by array (36)
ATAC-seq (17)
Comparative genomic hybridization by array (12)
Cell line - High-throughput sequencing (11)
Single nucleus RNA sequencing (10)
Transcription profiling by tiling array (6)
Unknown experiment type (4)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (3)
High-throughput sequencing (2)
Other (2)
ScATAC-seq (2)
MicroRNA profiling by array (2)
CUT&RUN (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Cell line - Two-color microarray (1)
One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
Antigen profiling (1)
Hi-C (1)
RIP-seq (1)

Release Date

2013 (208)
2010 (95)
2014 (82)
2025 (76)
2026 (69)
2023 (67)
2021 (53)
2016 (53)
2015 (53)
2011 (47)
2022 (45)
2024 (44)
2008 (43)
2012 (41)
2020 (39)
2009 (38)
2007 (33)
2019 (26)
2017 (23)
2018 (18)
2006 (15)
2005 (15)
2004 (11)
2003 (2)
2001 (2)
1999 (1)

Lab affiliation

Department of Chemistry and Biochemistry, Brigham Young University (2)
Brigham Young University (1)
Centro de Astrobiología (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, Republic of Korea; Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, Republic of Korea. (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, USA (1)
Department of Chemistry and Biochemistry, Brigham Young University. (1)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD, USA (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Helmholtz Centre for Environmental Research – UFZ Department of Molecular Systems Biology Permoserstr. 15 04318 Leipzig, Germany (1)
Institute of Systems Neuroscience, National Tsing Hua University, Hsinchu, Taiwan, Republic of China (1)
Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 58 Abrahama St., 80-307 Gdansk, Poland (1)
Oregon Hearing Research Center Oregon Health & Science University Portland OR 97239 USA (1)
PRISM - Unité Inserm 1192 Université de Lille France (1)
Stem cell and developmental genetics laboratory, The Francis Crick Institute, London, UK (1)
University of Texas at Austin, College of Natural Sciences, Department of Molecular Biosciences (1)
W. Harry Feinstone Department of Molecular Microbiology & Immunology and the Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health (1)

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Human U2OS DNApk GLASS-ChIP LC-MS/MS

The Mre11-Rad50-Nbs1 (MRN) complex recognizes and processes DNA double-strand breaks for homologous recombination by performing short-range removal of 5ʹ strands. Endonucleolytic processing by MRN requires a stably bound protein at the break site—a role we postulate is played by DNA-dependent protei...

ORGANISM(S): Homo sapiens (Human)

2023-10-24 | PXD045033 | Pride

Low-Yellowing Phosphor-in-Glass for High-Power Chip-on-board White LEDs by Optimizing a Low-Melting Sn-P-F-O Glass Matrix.

Not available

S-EPMC5943285 | biostudies-literature

An All-Glass Microfluidic Network with Integrated Amorphous Silicon Photosensors for on-Chip Monitoring of Enzymatic Biochemical Assay.

Not available

S-EPMC5746781 | biostudies-literature

Nanoporous Glass Integrated in Volumetric Bar-Chart Chip for Point-of-Care Diagnostics of Non-Small Cell Lung Cancer.

Not available

S-EPMC4934604 | biostudies-literature

High-Throughput Continuous-Flow Separation in a Micro Free-Flow Electrophoresis Glass Chip Based on Laser Microfabrication.

Not available

S-EPMC8838507 | biostudies-literature

Stable electrospray signal on a microfabricated glass chip with three-dimensional open edge and tiered depth geometries.

Not available

S-EPMC11412618 | biostudies-literature

Facile Patterning of Thermoplastic Elastomers and Robust Bonding to Glass and Thermoplastics for Microfluidic Cell Culture and Organ-on-Chip.

Not available

S-EPMC8158514 | biostudies-literature

Manipulating nanoliter fluid circuits on an all-glass chip by the magnetic field

Not available

S-EPMC10481363 | biostudies-literature

RNA-seq of Sorghum bicolor with drought tolerant genotype grown under drought-stress or no-stress control environment

The present study is expected to reveal differentially expressed genes under drought stress of Sorghum bicolor. The seeds of Sorghum genotype drought tolerant (DT) were grown at 28-32°C day/night temperature with 12/12 h light/dark period in the phytotron glass house. The fully opened uppermost leav...

ORGANISM(S): Sorghum bicolor

2015-08-15 | E-MTAB-3571 | biostudies-arrayexpress

A One-Square-Millimeter Compact Hollow Structure for Microfluidic Pumping on an All-Glass Chip.

Not available

S-EPMC6190336 | biostudies-literature

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1282 Results

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