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TFInfer: a tool for probabilistic inference of transcription factor activities
2013-01-14 | 102 | FAIRDOMHub
Runt domain (Runx) transcription factors constitute a metazoan family of sequence specific DNA binding proteins that are essential for animal development. The sea urchin Runx gene SpRunt-1, which is expressed globally during early embryogenesis, is required for blastula stage cell proliferation and...
ORGANISM(S): Strongylocentrotus purpuratus 
A shotgun metagenome microarray was created and used to investigate gene transcription during vinyl chloride (VC) dechlorination by a microbial enrichment culture called KB1. The array was constructed by spotting genomic fragments amplified from short-insert libraries of KB1 metagenomic DNA. Subse...
ORGANISM(S): dechlorinating enrichment culture KB-1 
Genotype-by-sequencing reads from three groups of North American warblers (within genus Geothlypis and genus Setophaga)
The application of toxicogenomics as a predictive tool for chemical risk assessment has been under evaluation by the toxicology community for more than a decade. However, toxicogenomics predominately remains a tool for investigative research rather than for regulatory risk assessment. In this study,...
ORGANISM(S): Homo sapiens 
The goal of this experiment is to identify the pathways that are deregulated as part of an adaptive response to high levels of ethanol in the media. Ethanol tolerant cells (HG228) grown in minimal media plus 1.5% (v/v) ethanol were hybridized against E. coli MG1655 grown under similar conditions. Th...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
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