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MetabolomicsBrown and beige adipose tissue regulate systemic metabolism through a metabolite interorgan signaling axis
Brown and beige adipose tissue are emerging as distinct endocrine organs. These tissues are functionally associated with skeletal muscle, adipose tissue metabolism and systemic energy expenditure, suggesting an interorgan signaling network. Using metabolomics, we identify 3-methyl-2-oxovaleric acid,...
2022-03-03 | MTBLS2436 | MetaboLights
ProteomicsData-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome
Metaproteomics used bottom-up mass spectrometry to detect and quantify the proteins present in microbiome samples. Historically, the methodology of choice in these analyses has been Data-Dependent Acquisition mass spectrometry (DDA-MS). In this manuscript we see sought to evaluate the reproducibilit...
ORGANISM(S): Enterobacteria phage ES18 Thermus thermophilus Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) Bacteria Stenotrophomonas maltophilia Nitrosospira multiformis Anthracocystis tumefaciens Alteromonas macleodii Archaea Salmonella phage P22 Paracoccus denitrificans Pseudomonas denitrificans (nom. rej.) unclassified Bacillus subtilis group Roseobacter Cupriavidus metallidurans Chlamydomonas reinhardtii Nitrososphaera viennensis Enterobacteria phage f2 Nitrosomonas ureae Escherichia phage M13 Chromobacterium violaceum unclassified Pseudomonas fluorescens group Escherichia coli Pseudomonas cf. pseudoalcaligenes Rhizobium leguminosarum Desulfovibrio vulgaris str. Hildenborough Staphylococcus aureus Paraburkholderia xenovorans 
2024-12-19 | PXD054415 | Pride
Data independent acquisition Microbiome Metaproteomics 
ProteomicsProteogenomic analysis in hibernating mammal suggests contribution of skeletal muscle physiology to hibernation phenotype
Mammalian hibernation is a strategy employed by many species to survive fluctuations in resource availability and environmental conditions. Hibernating mammals endure conditions of dramatically depressed heart rate, body temperature, and oxygen consumption; yet show no typical pathological response...
ORGANISM(S): Spermophilus tridecemlineatus (Thirteen-lined ground squirrel) 
2018-07-11 | PXD003188 | Pride
Amp –deaminsase 1 Proteomics Itraq Skeletal muscle Fibromodulin Galaxy-p Hibernation 
UnknownA two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.
Not available
S-EPMC3633484 | biostudies-literature
UnknownThe impact of viral mutations on recognition by SARS-CoV-2 specific T cells.
Not available
S-EPMC8552693 | biostudies-literature
UnknownBAL Fluid Metaproteome in Acute Respiratory Failure.
Not available
S-EPMC6236685 | biostudies-literature
UnknownSalivary Antibody Responses to Potentially Waterborne and Environmentally Transmitted Infections Among Two Tribal Nations in the Southwest United States.
Not available
S-EPMC11652455 | biostudies-literature
UnknownWorkflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.
Not available
S-EPMC3618284 | biostudies-literature
ProteomicsWorkflow for metaproteome characterization in bronchoalveolar lavage fluid (BALF)
Establish a pipeline for identifying bacterial peptides from human bronchoalveolar lavage fluid samples.
ORGANISM(S): Homo sapiens (Human) 
2019-06-24 | PXD008273 | Pride
Balf Metaproteome 
ProteomicsADR-directly-interfering amino acids based on competitive isoTOP-ABPP in normoxia
Hepatocellular carcinoma (HCC) is one of the most malignant tumors in the world with high morbidity and mortality rate. Many strategies have been tried to fight with HCC, yet effective treatment is still lacking. In this study, the in vitro and in vivo anti-HCC activity of andrographolide (ADR), an ...
ORGANISM(S): Homo sapiens (Human) 
2023-03-11 | PXD034583 | Pride
Andrographolide 
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