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Protein O-glycosylation is an abundant PTM of the central nervous system and impairments in O-glycosylation cause severe developmental disorders most with prominent neurological involvement. Despite recent advancements, lack of insight into targets of protein O-glycosylation in neuronal tissues seve...
ORGANISM(S): Homo sapiens (Human) 
2025-07-28 | PXD058040 | Pride
Knockout of the N-acetyltransferase AtNAA50 causes severe dwarfism the model plant Arabidopsis thaliana but does not affect the activity of the essential NatA complex.
ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress) 
The purpose of this study was to investigate oral microbiome and host proteins in archaeological human dental tissues using a shotgun proteomics approach. The research focuses on dental calculus (mineralized plaque), dentine, a carious lesion, and an alveolar bone abscess from the medieval site of D...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Homo Sapiens (ncbitaxon:9606) Ovis (ncbitaxon:9935) 
2016-10-23 | MSV000080279 | MassIVE
Idiopathic pulmonary fibrosis is a debilitating disease leading ultimately to death without existing treatment. Here we profiled the proteome of 30 IPF cores and 10 control cores. The goal was to validate findings of snRNA-seq and new informatics means to mine the data (UNAGI) and evaluate in silico...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-10-16 | MSV000093129 | MassIVE
The MHC vcf call set was generated using a modified AsmVar and BayesTyper pipeline. In contrast to the original pipeline, where variant calling is performed using alignment of collapsed assemblies to a reference genome, the MHC call set was produced using alignment of phased MHC haplotypes. Two iter...
Variants on the Y chromosome for 62 danish males in VCF format from the GenomeDenmark Phase 2 cohort. Variants were called using reference based approaches such as the haplotype-caller module from GATK and using alignment of denovo assemblies to the reference using ASMvar.
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