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GenomicsHeLa Cell Genome Sequencing Studies

This study contains all authorized whole genome sequence data of the HeLa cell line from datasets currently in dbGaP. These data have been approved for health, medical, and/or biomedical research purposes. Access to these data can be granted for one year. Accessible data will include the studies ...

phs000640.v1.p1 | EGA
GenomicsThe genomic Landscape of an HeLa cell line.
Genotyping by high-throughput sequencing of HeLa Kyoto H2B-mRFP/mEGFP-alpha-tubulin cell line
PRJEB426 | ENA
GenomicsGene expression analysis in HeLa Kyoto cells upon knockdown of JAZF1
Gene expression analysis in HeLa Kyoto cells upon knockdown of JAZF1
PRJNA685204 | ENA
TranscriptomicsThe permanent reduction of TIA proteins molds expression transcriptome in HeLa cells
This study provides, for the first time, TIA1 and TIAR linked-transcriptomic analysis by using RNA-Seq next-generation sequencing technology. Illumina RNA-Seq was used to survey transcriptome profiles from permanent TIA1- and TIAR-(shRNA-mediated) deficient HeLa cells. Analysis of the transcriptomes...
ORGANISM(S): Homo sapiens 
2014-11-19 | E-GEOD-46516 | biostudies-arrayexpress
GenomicsChIP-Seq sequencing of novel interactors of H3K4me3, H3K36me3 and H3K9me3
This study describes the epigenetic profiling of the novel interactors of H3K4me3, H3K36me3 or H3K9me3. The interactors were ChIP-Seq profiled by their GFP tag in stably transfected HeLa (Kyoto) cells. The interactors include GATAD1, Sgf29, BAP18, TRRAP, PHF8, N-PAC and LRWD1 (including replicates),...
ORGANISM(S): Homo sapiens 
2010-09-17 | E-GEOD-20303 | biostudies-arrayexpress
GenomicsGenome-wide ChIP-seq analysis of H2A.Z and H2A.Zac in HeLa Kyoto cells upon knockdown of JAZF1
Genome-wide ChIP-seq analysis of H2A.Z and H2A.Zac in HeLa Kyoto cells upon knockdown of JAZF1
PRJNA685752 | ENA
ProteomicsMulti-omic measurements of heterogeneity in HeLa cells across laboratories
We collected 14 stock Hela aliquots from 13 different laboratories across the globe and cultured them in the same conditions. We extensively profiled the genome-wide copy numbers, mRNAs, proteins, protein turnover rates by genomics techniques and the highly reproducible and accurate proteomic method...
ORGANISM(S): Homo sapiens (Human) 
2019-02-11 | PXD009273 | Pride
Reproducibility Hela cells Swath-ms 
ProteomicsER chemical proteomics with ER-localizable reactive molecules
The endoplasmic reticulum (ER) is an organelle that performs a variety of essential cellular functions via interactions with other organelles. Despite its important role, chemical tools for profiling the composition and dynamics of ER proteins remain very limited because of the labile nature of thes...
ORGANISM(S): Homo sapiens (Human) 
2018-11-21 | PXD011618 | Pride
Hela cell Chemical proteomics Er 
ProteomicsProteome changes in HeLa with stable shRNA-based knockdown of ME1, MCT4, PDH1a
This report provides data on proteomic changes in HeLa cell line induced by knockdown of different genes involved into central metabolism: pyruvate dehydrogenase 1 subunit A (PDH1a), NADP-dependent malic enzyme (ME1), pyruvate carboxylase (PC) and monocarboxylate transporter 4 (MCT4). HeLa Kyoto cel...
ORGANISM(S): Homo sapiens (Human) 
2026-09-29 | PXD044346 | Pride
Hela  shrna knockdown  central metabolism 
ProteomicsQuantitative ER chemical proteomics with ER-localizable reactive molecules under ER-stress condition
The endoplasmic reticulum (ER) is an organelle that performs a variety of essential cellular functions via interactions with other organelles. Despite its important role, chemical tools for profiling the composition and dynamics of ER proteins remain very limited because of the labile nature of thes...
ORGANISM(S): Homo sapiens (Human) 
2018-11-22 | PXD011619 | Pride
Tunicamycin Hela cell Chemical proteomics Silac Er-stress Quantitative proteomics Er 
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