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Metabolomics3D'omics: Salmonella challenge chicken trial

BioProject PRJEB86258 at https://www.ebi.ac.uk/ena/browser/view/PRJEB86258


The full study description is published in detail before:

Poult Sci. 2025 Feb 6;104(4):104890. doi: 10.1016/j.psj.2025.104890

“Differential effects of synbiotic delivery route (Feed, water, com...

2025-11-19 | MTBLS13315 | MetaboLights
ProteomicsMtb_Trypsin_Lysc
The digestive enzymes are trypsin and Lysc
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003638 | PeptideAtlas
ProteomicsMtb_Trypsin_Lysc_membrane
The digestive enzymes are trypsin and Lysc, membrane
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003637 | PeptideAtlas
ProteomicsMtb_Triple_Digest
The digestive enzymes are trypsin, chymotrypsin and Lysc
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003636 | PeptideAtlas
ProteomicsMtb_Triple_Digest_membrane
The digestive enzymes are trypsin, chymotrypsin and Lysc, membrane
ORGANISM(S): Mycobacterium Tuberculosis 
2012-12-31 | PAe003635 | PeptideAtlas
ProteomicsComparison of TMT6plex MS3 IT vs OT
This dataset is associated with a manuscript where the SPS MS3 method was used for quantifying peptides and a comparison was made between using the ion trap or Orbitrap for the MS3 analysis
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2016-05-03 | MSV000079696 | MassIVE
Proteomicsyagpm2_1
enrichment for specialized purple membrane proteins, cell culture #2 Goo et al., unpublished data.
ORGANISM(S): Halobacterium Nrc-1 (halobacterium) 
2012-12-31 | PAe000256 | PeptideAtlas
UnknownSoil depth determines the microbial communities in <i>Sorghum bicolor</i> fields within a uniform regional environment.
Not available
S-EPMC12131775 | biostudies-literature
ProteomicsReadout of histone methylation by Trim24 locally restricts chromatin opening by p53
The genomic binding sites of the transcription factor (TF) and tumour suppressor p53 are unusually diverse in regards to their chromatin features, including histone modifications, opening the possibility that chromatin provides context-dependence for p53 regulation. Here, we show that the ability of...
ORGANISM(S): Mus musculus (Mouse) 
2023-05-05 | PXD039553 | Pride
Trim24 p53 mouse 
ProteomicsInvestigation upon the state of p53 as well as interaction partners, in so much as can be learned from using the multi-component v5-dTag system.
Chromatin modifications provide additional context-dependence for DNA sequence-based gene regulation. Binding sites of the transcription factor (TF) and important tumour suppressor p53 are unusually diverse with regards to their chromatin accessibility and histone modifications, suggesting different...
ORGANISM(S): Mus musculus (Mouse) 
2023-05-05 | PXD033674 | Pride
Trim24 Gene regulation Chromatin P53 
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