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MetabolomicsGolgi-IP, a tool for multimodal analysis of Golgi molecular content
The Golgi is a membrane-bound organelle that is essential for protein and lipid biosynthesis. It represents a central trafficking hub that sorts proteins and lipids to various destinations or for secretion from the cell. The Golgi has emerged as a docking platform for cellular signaling pathways inc...
2023-06-27 | MTBLS6511 | MetaboLights
ProteomicsProteomics via immune-precipitation assisted Mass-Spectrometry of Androgen receptor in INS1 cells.
IP- Mass Spec of INS1 cells treated with DHT or GLP1 and then subjected to IP of AR protein and subsequent mass spec to identify binding partners of AR relevant to Insulin signaling and secretion.
ORGANISM(S): Rattus norvegicus (Rat) 
2023-04-17 | PXD041592 | Pride
Ins1 Androgen receptor Insulin signaling Beta cell biology 
ProteomicsRebH-Catalyzed Indole and Azaindole Halogenation Utilizing Co-Purified E. Coli Reductase
IP-mass spec to determine proteins binding to RebH enzyme expressed in E. coli.
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2022-10-30 | MSV000090619 | MassIVE
ProteomicsDNA replication initiation RECQ4 WT
FLAG-RECQ4 IP Mass spec from HEK293 cells depleted with the endogenous RECQ4 gene. peak file 77274.mzXML. Result file 77274.mzid
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-01-06 | MSV000088652 | MassIVE
ProteomicsIP-mass spec GFP and GFP-CFAP100
HaCaT cells were transfected with CFAP100- 11 GFP, and the lysate was subjected to immunoprecipitation with the anti-GFP antibody
ORGANISM(S): Homo Sapiens 
2025-02-24 | PXD061110 |
ProteomicsC. elegans DYN-1 interacting proteins
We found that NDK-1/NDPK functions together with DYN-1/Dynamin to trigger membrane remodeling events during apoptotic cell clearance, including engulfment and phagosome maturation. We showed by IP-Mass Spec studies that C. elegans NDK-1/NDPK and DYN-1/Dynamin function in the same complex.
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2017-12-27 | MSV000081868 | MassIVE
ProteomicsPPARG interactions with UBR5 and MRE11-RAD50-NBS1 are required for DNA damage response and repair.
PPARG interactome datasets containing (1) Flag-PPARG AP-MS, identifying MRE11, RAD50 and NBS1 as novel interactors, (2) tandem-IP (in solution and silver fragments) of PPARG-Strep and Flag-NBS1, which identifies PPARG interaction with UBR5 (3) tandem-IP (same as 2) with BS3 cross-linking illustrates...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-12-18 | MSV000083257 | MassIVE
ProteomicsRTN3 and control IP mass spectrometry
Immunoprecipitation of RTN3, Sec61B, and RTN4. Sec61B and RTN4 serve as controls.
ORGANISM(S): Homo sapiens (Human) 
2021-08-16 | PXD024725 | Pride
Er-phagy Rtn3 
ProteomicsIFITM3 restricts virus-induced inflammatory cytokine production by limiting Nogo-B mediated TLR responses
Interferon-induced transmembrane protein 3 (IFITM3) is a restriction factor that limits viral pathogenesis and exerts poorly understood immunoregulatory functions. Here, using human and mouse models, we demonstrate that IFITM3 promotes MyD88-dependent, TLR-mediated IL-6 production following exposure...
ORGANISM(S): Mus musculus (Mouse) 
2022-07-28 | PXD035254 | Pride
Viral pathogenesis Ip-mass spec Silac 
ProteomicsIdentification of BBOX1 binding partners using AP-MS in ccRCC tumors
Gamma-Butyrobetaine Hydroxylase 1 (BBOX1) is a 2-OG dependent enzyme evolving in carnitine synthesis and lipid metabolism. In this study, we propose BBOX1 is a potential tumor suppressor in kidney cancer. We found that BBOX1 is generally underexpressed in ccRCC cells and patients. Restore BBOX1 in c...
ORGANISM(S): Homo sapiens (Human) 
2024-12-23 | PXD050455 | Pride
Bbox1 Ccrcc 
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