Jiang M M - OmicsDI

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Unknown (24381)
Proteomics (712)
Transcriptomics (459)
Genomics (146)
Metabolomics (130)
Multiomics (20)
Models (3)
Other (2)
Genomic (1)

Organisms

Homo sapiens (361)
Mus musculus (149)
Caenorhabditis elegans (40)
Drosophila melanogaster (27)
Arabidopsis thaliana (16)
Oryza sativa (15)
Sus scrofa (15)
Saccharomyces cerevisiae (10)
Zea mays (8)
Rattus norvegicus (7)
Bos taurus (7)
Macaca mulatta (6)
Plasmodium falciparum (5)
Streptococcus suis (4)
Danio rerio (4)
Lates calcarifer (3)
Streptococcus suis 05ZYH33 (3)
Heterocephalus glaber (3)
Glycine max (3)
Ovis aries (3)
Oryza sativa Japonica Group (3)
Bathyergus suillus (2)
Cucumis sativus (2)
Dickeya dadantii 3937 (2)
Pan troglodytes (2)
Dickeya dadantii (2)
Plasmodium falciparum 3D7 (2)
Triticum aestivum (2)
Canis lupus familiaris (2)
Gallus gallus (2)

Organisms

Oryza sativa (2)
Manduca sexta (1)
Medicago truncatula (1)
Caenorhabditis elegans (1)
uncultured bacterium (1)
Arabidopsis thaliana (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (547)
pride (477)
iProX (169)
MetaboLights (126)
EGA (48)
PeptideAtlas (23)
MassIVE (17)
PAXDB (17)
ENA (10)
jPOST (4)
PanoramaPublic (4)
GNPS (3)
BioModels (2)
GPMDB (2)
Cell Collective (1)
dbGaP (1)
geo (1)
NODE (1)

Tissue

Cell culture (127)
Brain (28)
Epithelial cell (24)
Liver (19)
Leaf (17)
Others (16)
Testis (15)
Permanent cell line cell (14)
Blood (12)
Blood plasma (12)
Root (12)
Fibroblast (11)
Lung (11)
Plant cell (11)
Heart (10)
Macrophage (9)
Kidney (7)
Skin (7)
B cell (6)
Blood cell (6)
Colon (6)
Hepatocyte (6)
Stem cell (6)
Whole body (6)
Bone marrow (5)
Embryonic stem cell (5)
Primary cell (5)
Spleen (5)
Embryo (4)
Plasma Non-glyco (3)

Disease

Disease free (19)
Breast cancer (12)
Colon cancer (6)
Lung cancer (6)
Cardiovascular system disease (5)
Type 2 diabetes mellitus (5)
Acute leukemia (4)
Cervix carcinoma (3)
Plasmodium falciparum malaria (3)
Not Available (2)
Alzheimer's disease (2)
Autism spectrum disorder (2)
Brain cancer (2)
Brain disease (2)
Colorectal carcinoma (2)
Gerstmann-Straussler-Scheinker syndrome (2)
Hepatocellular carcinoma (2)
Liposarcoma (2)
Malignant neoplasm of ovary (2)
Multiple myeloma (2)
Non-small cell lung carcinoma (2)
Osteosarcoma (2)
Pancreatic ductal adenocarcinoma (2)
RNAi_reagent (2)
Toxoplasmosis (2)
Wounds and Injuries (2)
Diabetes mellitus (1)
Benign nevi (1)
Normal (1)
B-cell lymphoma (1)

Technology Type

Mass Spectrometry (477)
Shotgun proteomics (262)
Mass spectrometry (79)
Bottom-up proteomics (70)
Affinity purification coupled with mass spectrometry proteomics (47)
Mass spectrometry assay (46)
Data-dependent acquisition (37)
Gel-based experiment (37)
Data-independent acquisition (31)
Top-down proteomics (22)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
SWATH MS (7)
Illumina HiSeq 2000 (5)
DiaPASEF (5)
SRM/MRM (5)
Mass spectrometry imaging (3)
Affinity proteomics (2)
All-ion fragmentation (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
NMR spectroscopy (1)
Glycoproteomics (1)
HDMSE (1)
Immunopeptidomics (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2000 (8)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2500 (5)
Orbitrap Fusion Lumos (5)
ArrayWoRx Biochip Reader [Applied Precision] (4)
Illumina HiSeq 4000 (4)
NextSeq 500 (4)
Q Exactive (4)
Agilent 2100 Bioanalyzer (3)
Illumina Genome Analyzer IIx (3)
MS:1000031 (3)
PromethION (2)
GeneChip Instrument System (2)
Affymetrix mouse gene 1.0 ST arrays (2)
PacBio RS II (2)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Instrument (2)
Orbitrap Exploris 480 (2)
Microbeads (1)
Ribo-Zero Gold (Illumina) (1)
Covaris E220evolution (1)
GenePix Personal 4100A [Axon Instruments] (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Ion Torrent PGM (1)
MinION (1)
HiSeq X Ten (1)
6545 Q-TOF LC/MS (1)
TSQ Quantum Ultra (1)

Publication Date

2025 (118)
2022 (116)
2021 (96)
2014 (95)
2023 (83)
2026 (82)
2024 (80)
2012 (74)
2010 (74)
2020 (70)
2013 (68)
2015 (60)
2011 (59)
2019 (55)
2016 (37)
2008 (35)
2018 (33)
2009 (30)
2017 (25)
2007 (12)
2005 (9)
2006 (6)
2004 (3)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
2ABD_HUMAN (17)
3BHS2_HUMAN (17)
3BP1_HUMAN (17)
3BP5L_HUMAN (17)
3HAO_HUMAN (17)
3HIDH_HUMAN (17)
3MG_HUMAN (17)
41_HUMAN (17)
4ET_HUMAN (17)
4F2_HUMAN (17)
5NT3A_HUMAN (17)
5NTC_HUMAN (17)
5NTD_HUMAN (17)
6PGD_HUMAN (17)
6PGL_HUMAN (17)
9606.ENSP00000228938 (17)
9606.ENSP00000233596 (17)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000147251 (6)
ENSG00000247315 (5)
ENSG00000229353 (3)

CHEBI ID

CHEBI:30769 (21)
CHEBI:15741 (20)
CHEBI:17053 (18)
CHEBI:16015 (18)
CHEBI:16027 (18)
CHEBI:30915 (15)
CHEBI:18012 (15)
CHEBI:32816 (15)
CHEBI:15978 (11)
CHEBI:16238 (10)
CHEBI:30797 (1)
CHEBI:16389 (1)
CHEBI:30887 (1)
CHEBI:422 (1)
CHEBI:30744 (1)
CHEBI:17877 (1)
CHEBI:15380 (1)
CHEBI:16977 (1)
CHEBI:17976 (1)
CHEBI:16928 (1)
CHEBI:15991 (1)
CHEBI:17925 (1)
CHEBI:15377 (1)
CHEBI:15351 (1)
CHEBI:15346 (1)
CHEBI:29052 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:18367 (1)
CHEBI:18009 (1)

Metabolite Name

Hypoxanthine (33)
Guanosine (31)
Adenosine (30)
Adenine (30)
Uridine (29)
Riboflavin (26)
Creatine (26)
Inosine (25)
Cytosine (24)
L-Phenylalanine (24)
L-Histidine (23)
Oleamide (21)
Xanthosine (20)
Guanine (20)
Uracil (19)
L-Tryptophan (19)
Cytidine (19)
Creatinine (19)
Betaine (18)
Azelaic acid (18)
Thymidine (18)
Succinic acid (17)
Taurine (17)
Glycine (16)
Genistein (16)
L-Arginine (16)
Choline (16)
Spermidine (16)
Xanthine (16)
L-Methionine (16)

First Public Date

2013 (4)
2014 (2)
2024 (1)
2022 (1)
2019 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (18)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
China Agricultural University (4)
School of Biological Sciences, Department of Cell and Developmental Biology, University of California, San Diego, CA, USA (4)
Tsinghua University, China (4)
Beijing proteome research center (3)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (3)
College of Biology, Hunan University, China (3)
Department of Genetics, Stanford University (3)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee (3)
Ocean University of China (3)
Shandong Normal University (3)
Shandong University (3)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (3)
Tsinghua University (3)
1. Department I of Internal Medicine, Center for Integrated Oncology (CIO), Aachen-Bonn- Cologne-Duesseldorf, Excellence Cluster for Cellular Stress Response and Aging-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne (UoC), 50937 Cologne, Germany 2. Department of Hematology and Cellular Therapy, University of Leipzig, Leipzig, Germany (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
Cancer Center and Research Institute of Intestinal Diseases, Shanghai Tenth People's Hospital, School of Medicine, Tongji University (2)
Chemistry Department, Columbia University in the City of New York (2)
Children's Hospital of Nanjing Medical University (2)
China Agricultural University, College of Animal Science and Technolgoy, Animal genetics and breeding (2)
College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, Hubei, P. R. China. (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)
Fujian Agriculture and Forestry University (2)
Hangzhou Normal University (2)

IsPrivate

False (2)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
N6 (1)

Study type

Transcription profiling by array (224)
RNA-seq of coding RNA (94)
ChIP-seq (70)
Unknown experiment type (25)
RNA-seq of non coding RNA (21)
Comparative genomic hybridization by array (20)
ChIP-chip by tiling array (17)
Methylation profiling by array (15)
ChIP-chip by array (13)
Methylation profiling by high throughput sequencing (12)
Other (8)
DNA-seq (6)
Transcription profiling by tiling array (5)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
ATAC-seq (2)
MNase-seq (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Ribo-seq (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2025 (3823)
2022 (3325)
2023 (3035)
2024 (2955)
2021 (2497)
2020 (1831)
2019 (1354)
2018 (1074)
2017 (953)
2016 (766)
2015 (729)
2026 (550)
2014 (539)
2013 (377)
2012 (287)
2011 (229)
2010 (206)
2009 (112)
2008 (107)
2007 (56)
2005 (33)
2006 (31)
2004 (21)
1999 (9)
2002 (6)
2001 (6)
2000 (6)
2003 (5)
1997 (2)
1996 (2)

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Discussion on "LEAP: the latent exchangeability prior for borrowing information from historical data" by Ethan M. Alt, Xiuya Chang, Xun Jiang, Qing Liu, May Mo, H. Amy Xia, and Joseph G. Ibrahim.

Not available

S-EPMC11427888 | biostudies-literature

A microRNA network regulates expression and biosynthesis of CFTR and CFTR-M-NM-^TF508.

Production of functional proteins requires multiple steps including gene transcription and post-translational processing. MicroRNAs (miRNA) can regulate individual stages of these processes. Despite the importance of the cystic fibrosis transmembrane conductance regulator (CFTR) channel for epithe...

ORGANISM(S): Homo sapiens

2012-09-04 | E-GEOD-38956 | biostudies-arrayexpress

MTCH2 promotes adipogenesis in intramuscular preadipocytes via an m⁶A-YTHDF1-dependent mechanism.

Not available

S-EPMC6516144 | biostudies-literature

Alternative mutational architectures producing identical M -matrices can lead to different patterns of evolutionary divergence.

Not available

S-EPMC11642737 | biostudies-literature

Phenylpyrazoles as Inhibitors of the m⁶A RNA-Binding Protein YTHDF2.

Not available

S-EPMC11862924 | biostudies-literature

Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros

5-methylcytosine is a major epigenetic modification sometimes called "the fifth nucleotide". However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes including zebrafish gametes and early embryos. The...

ORGANISM(S): Danio rerio

2013-05-20 | E-GEOD-44075 | biostudies-arrayexpress

Gelation-driven selection in dynamic covalent C[double bond, length as m-dash]C/C[double bond, length as m-dash]N exchange.

Not available

S-EPMC5643956 | biostudies-literature

Characterization of CTX-M-140, a Variant of CTX-M-14 Extended-Spectrum β-Lactamase with Decreased Cephalosporin Hydrolytic Activity, from Cephalosporin-Resistant Proteus mirabilis.

Not available

S-EPMC5038311 | biostudies-literature

De Novo Mutation of m.3243A>G together with m.16093T>C Associated with Atypical Clinical Features in a Pedigree with MIDD Syndrome.

Not available

S-EPMC6476128 | biostudies-literature

Pivotal plasmids drive the global spread of CTX-M-27 in Escherichia coli.