Jk 31 - OmicsDI

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Unknown (1343)
Transcriptomics (45)
Proteomics (21)
Metabolomics (10)
Genomics (9)
Multiomics (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (17)
Alteromonadales (17)
Bacteria (17)
Canis lupus familiaris (17)
Carya cathayensis (17)
Ectopseudomonas oleovorans CECT 5344 (17)
Ensifer adhaerens (17)
Enterococcus faecalis (17)
Globicatella sanguinis (17)
Halictus scabiosae (17)
Histomonas meleagridis (17)
Human immunodeficiency virus 1 (17)
Listeria monocytogenes (17)
Listeria monocytogenes EGD-e (17)
Methylohalobius crimeensis 10Ki (17)
Mus musculus (17)
Mycobacterium tuberculosis (17)
Homo sapiens (15)
Drosophila melanogaster (10)
Caenorhabditis elegans (5)
Mus musculus (5)
Schizosaccharomyces pombe (4)
Bos taurus (4)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (2)
Staphylococcus aureus subsp. aureus USA300_FPR3757 (1)
Cyprinus carpio (1)
Oncorhynchus mykiss (1)
Rattus norvegicus (1)
Danio rerio (1)

Organisms

Bartonella quintana JK 31 (1)

Repository

biostudies-arrayexpress (53)
pride (17)
MetaboLights (10)
MassIVE (3)
EGA (2)
ENA (1)

Tissue

Epithelial cell (4)
Lung (4)
Cell culture (3)
Blood plasma (1)
Brown adipose tissue (1)
Brown fat cell (1)
Colorectal cancer cell (1)
Fibroblast (1)
Kidney cell (1)
Lens (1)
Nerve cord (1)
Spermatozoid (1)

Disease

Lung cancer (2)
Non-small cell lung carcinoma (2)
Normal (1)
Malignant neoplasm of ovary (1)
Neurological dysfunction (1)
Obesity (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (9)
Mass spectrometry (7)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
SWATH MS (2)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
NMR spectroscopy (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
GenePix 4000A [Axon Instruments] (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
MS:1000031 (1)
Orbitrap Fusion (1)
Q Exactive (1)
QSTAR XL (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (9)
2010 (8)
2013 (7)
2017 (6)
2024 (5)
2016 (5)
2012 (5)
2011 (5)
2021 (4)
2025 (4)
2014 (3)
2009 (3)
2018 (3)
2022 (3)
2020 (3)
2026 (2)
2023 (2)
2008 (1)
2007 (1)
2006 (1)
2005 (1)
2019 (1)

CHEBI ID

CHEBI:15354 (4)
CHEBI:17015 (3)
CHEBI:17154 (3)
CHEBI:16566 (3)
CHEBI:16335 (3)
CHEBI:15355 (3)
CHEBI:17650 (3)
CHEBI:16467 (3)
CHEBI:15318 (3)
CHEBI:15603 (3)
CHEBI:17295 (3)
CHEBI:17596 (3)
CHEBI:17992 (2)
CHEBI:64517 (2)
CHEBI:64561 (2)
CHEBI:16680 (2)
CHEBI:17230 (2)
CHEBI:36313 (2)
CHEBI:4170 (2)
CHEBI:18295 (2)
CHEBI:16977 (2)
CHEBI:71466 (2)
CHEBI:94714 (2)
CHEBI:28197 (2)
CHEBI:17781 (2)
CHEBI:28044 (2)
CHEBI:133094 (2)
CHEBI:28683 (2)
CHEBI:28790 (2)
CHEBI:28171 (2)

Metabolite Name

Inosine (4)
Choline (3)
Oleamide (3)
Xanthine (3)
Uridine (3)
Glycerophosphocholine (3)
L-Phenylalanine (3)
Triazolobenzodiazepine (2)
Dihydroxy-(2-methoxyethoxy)-sulfanylidene-$l^{5}-phosphane (2)
7-Hydroxyethyl biscoumacetate (2)
CDP-glucose (2)
Iodiconazole (2)
Edtmp (2)
Hept-4-enedioylcarnitine (2)
(4-Hydroxy-3-iodo-5-nitrophenyl)acetic acid (2)
Phosphocreatine lactate (2)
Perfluoro-15-crown-5 (2)
Sodium glucoheptonate (2)
Pantoprazole Sulfone (2)
Perfluorohexanoic acid (2)
Suvorexant (2)
1-Ethoxymethyl-5-fluorouracil (2)
Vignatic acid A (2)
S-Nitroglutathione (2)
2-[(3-Iodophenyl)methyl]-1-[[N'-[(3-iodophenyl)methyl]carbamimidoyl]amino]guanidine (2)
(2R,3R,4S,5R)-5-Fluoro-2,3,4-trihydroxy-6-oxohexyl dihydrogen phosphate (2)
Phosphatidylinositol 4,5-diphosphate (2)
8-Nitro-cGMP (2)
(2-Amino-6-oxo-1H-purin-9-yl) dihydrogen phosphate (2)
3,5-Dinitrobenzoic acid (2)

First Public Date

2013 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (13)
ChIP-seq (6)
RNA-seq of non coding RNA (4)
ChIP-chip by array (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Proteomic profiling by mass spectrometer (1)
Comparative genomic hybridization by array (1)

Release Date

2022 (178)
2021 (144)
2023 (134)
2024 (122)
2025 (115)
2020 (105)
2017 (71)
2019 (71)
2015 (68)
2018 (68)
2014 (64)
2016 (53)
2013 (37)
2011 (35)
2012 (28)
2010 (27)
2009 (20)
2008 (15)
2026 (13)
2007 (8)
2006 (5)
2005 (4)
2002 (4)
2003 (2)
1997 (2)
2004 (1)
2001 (1)
2000 (1)

Lab affiliation

Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center (3)
Affiliation: Computational and Experimental Biology Group National Health Institute Dr. Ricardo Jorge, (INSA,I.P.) Av Padre Cruz, 1649-016 Lisboa-Portugal phone: 00351-217508124 (1)
Associate Professor, Department of Chemistry and Biochemistry, University of Texas At Arlington (1)
Charité Univeristätsmedizin Berlin, Department of Surgery, Augustenburger Platz 1, 13353 Berlin (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology, and College of Medicine or College of Pharmacy, Seoul National University, Seoul, Korea (1)
Department of Obstetrics and Gynecology, Inova Fairfax Medical Campus, Inova Health System (1)
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Departments of Ophthalmology and Visual Sciences and Genetics Albert Einstein College of Medicine Bronx, New York 10461 USA (1)
Experimental Medicine and Clinic (1)
Max Planck Institute of Biochemistry, Department for Proteomics and Signal transduction (1)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center Tampa, FL, USA (1)
Proteomics, Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany (1)
Salk Institute for Biological Studies (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Nanjing Medical University (1)

Tags

pathogen (1)
pathogen:bacterium (1)

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Bartonella quintana JK 31 strain:JK 31

Bartonella quintana JK 31 strain:JK 31 Genome sequencing and assembly

PRJNA81685 | ENA

Genetic variability of Cotton leaf curl betasatellite in Northern India.

Not available

S-EPMC4250495 | biostudies-literature

Shortgun Proteomic analysis of two Bartonella quintana strains

Proteomic analysis two strains of Bartonella quintana using In-solution digestion followed by Stron Cation Exchange (SCX) and RP nano-LC-MS/MS

ORGANISM(S): Bartonella quintana (Rochalimaea quintana) Bartonella quintana JK 31

2013-06-03 | PXD000076 | Pride

Probing phosphorylation by non-mammalian isoprenoid biosynthetic enzymes using (1)H-(31)P-(31)P correlation NMR spectroscopy.

Not available

S-EPMC3161243 | biostudies-literature

Drosophila OSS cell small RNA libraries

High-throughput sequencing of Drosophila melanogaster small RNAs from OSS cells. total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Page...

ORGANISM(S): Drosophila melanogaster

2009-06-08 | E-GEOD-15378 | biostudies-arrayexpress

Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans: fluoranthene

Physiologically based modelling using DEBtox (dynamic energy budget in toxicology) and transcriptional profiling were used in Caenorhabditis elegans to identify how physiological modes of action, as indicated by effects on system level resource allocation were associated with changes in gene express...

ORGANISM(S): Caenorhabditis elegans

2010-05-05 | E-GEOD-21011 | biostudies-arrayexpress

mab-31 and the TGF-beta pathway act in the ray lineage to pattern C. elegans male sensory rays.

Not available

S-EPMC2921377 | biostudies-literature

Novel 45-kilodalton leptospiral protein that is processed to a 31-kilodalton growth-phase-regulated peripheral membrane protein.

Not available

S-EPMC127625 | biostudies-literature

MiR-9, -31, and -182 deregulation promote proliferation and tumor cell survival in colon cancer.

Not available

S-EPMC3459282 | biostudies-literature

A 31-channel integrated "AC/DC" B₀ shim and radiofrequency receive array coil for improved 7T MRI.