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TranscriptomicsTranscription profiling time series of leaves from winter wheat grown under S and N-deficient conditions
Transcripomic analysis of leaf gene expression in S and N-deficient winter wheat during grain development. Tissue was harvested at anthesis and 7, 14 and 21 days post anthesis from experimental field plots.
ORGANISM(S): Triticum aestivum 
2008-09-18 | E-MEXP-1415 | biostudies-arrayexpress
ProteomicsTFT3 interacts with MAPKKK by coimmunoprecipitation
Tomato MAPKKK interacts with the N. benthamiana homologue of TFT3. MAPKKK-HA was transiently expressed in N. benthamiana leaves and immunoprecipitated using -HA agarose beads. 12 unique peptides of N. benthamiana TFT3 homologue were identified by liquid chromatography–mass spectrometry.
ORGANISM(S): Nicotiana tabacum (Common tobacco) 
2023-05-10 | PXD041469 | Pride
Tomato Plant defecnce 
ProteomicsN-terminomics Proteogenomics - N-terminal proteomics assisted profiling of the unexplored translation initiation landscape in Arabidopsis thaliana
Proteogenomics is a research field where proteome data is used to improve gene annotation. To achieve this, customized protein databases are constructed to match proteomic data. We perform a proteogenomic analysis using N-terminal COFRADIC data in order to identify novel translational initiation sta...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2017-04-24 | PXD004896 | Pride
Arabidopsis thaliana Proteogenomics N-terminal cofradic Ribosome profiling Positional proteomics Ribo-seq 
ProteomicsSystem-wide analyses reveal essential roles of N-terminal protein modification in bacterial physiology
Removal of the N-terminal formyl group on nascent proteins by peptide deformylase (PDF) is the most prevalent protein modification in bacteria that impacts over 90% of the proteome. PDF is essential and a critical target of antibiotic development; however, its role in bacterial physiology remains a ...
ORGANISM(S): Escherichia coli 
2022-07-20 | PXD032725 | Pride
Peptide deformylase N-terminal protein modification Membrane potential Mass spectrometry Ribosome profiling Protein biogenesis 
ProteomicsC4PR_LIV: N-terminomic analysis of SARS-CoV-2-infected Vero E6 cells (Unenriched)
Many events in viral infection are regulated through post-translational modification. In the case of positive-sense RNA viruses such as SARS-CoV-2 which encodes two viral proteases, proteolytic cleavage of both viral and cellular proteins is crucial for productive viral infection. In this work we st...
ORGANISM(S): Cercopithecus aethiops (Green monkey) (Grivet) 
2021-07-29 | PXD021154 | Pride
Tmtpro Sars-cov-2 Vero e6 Covid-19 N-terminomics 
ProteomicsC4PR_LIV: N-terminomic analysis of SARS-CoV-2-infected Vero E6 cells (Enriched - Variable Search)
Many events in viral infection are regulated through post-translational modification. In the case of positive-sense RNA viruses such as SARS-CoV-2 which encodes two viral proteases, proteolytic cleavage of both viral and cellular proteins is crucial for productive viral infection. In this work we st...
ORGANISM(S): Cercopithecus aethiops (Green monkey) (Grivet) 
2021-07-29 | PXD021403 | Pride
Tmtpro Sars-cov-2 Vero e6 Covid-19 N-terminomics 
ProteomicsC4PR_LIV: N-terminomic analysis of SARS-CoV-2-infected Vero E6 cells (Enriched)
Many events in viral infection are regulated through post-translational modification. In the case of positive-sense RNA viruses such as SARS-CoV-2 which encodes two viral proteases, proteolytic cleavage of both viral and cellular proteins is crucial for productive viral infection. In this work we st...
ORGANISM(S): Cercopithecus aethiops (Green monkey) (Grivet) 
2021-07-29 | PXD021153 | Pride
Tmtpro Sars-cov-2 Vero e6 Covid-19 N-terminomics 
ProteomicsC4PR_LIV: N-terminomic analysis of SARS-CoV-2-infected ACE2-A549 cells (Enriched)
Many events in viral infection are regulated through post-translational modification. In the case of positive-sense RNA viruses such as SARS-CoV-2 which encodes two viral proteases, proteolytic cleavage of both viral and cellular proteins is crucial for productive viral infection. In this work we st...
ORGANISM(S): Homo sapiens (Human) 
2021-07-29 | PXD021152 | Pride
Tmtpro Sars-cov-2 Ace2-a549 Covid-19 N-terminomics 
ProteomicsC4PR_LIV: N-terminomic analysis of SARS-CoV-2-infected ACE2-A549 cells (Enriched - Variable search)
Many events in viral infection are regulated through post-translational modification. In the case of positive-sense RNA viruses such as SARS-CoV-2 which encodes two viral proteases, proteolytic cleavage of both viral and cellular proteins is crucial for productive viral infection. In this work we st...
ORGANISM(S): Homo sapiens (Human) 
2021-07-29 | PXD021402 | Pride
Tmtpro Sars-cov-2 Ace2-a549 Covid-19 N-terminomics 
ProteomicsC4PR_LIV: N-terminomic analysis of SARS-CoV-2-infected ACE2-A549 cells (Unenriched)
Many events in viral infection are regulated through post-translational modification. In the case of positive-sense RNA viruses such as SARS-CoV-2 which encodes two viral proteases, proteolytic cleavage of both viral and cellular proteins is crucial for productive viral infection. In this work we st...
ORGANISM(S): Homo sapiens (Human) 
2021-07-29 | PXD021145 | Pride
C4pr_liv: n-terminomic analysis of sars-cov-2-infected ace2-a549 cells (unenriched) 
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