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MetabolomicsRole of jeotgal, a Korean traditional fermented fish sauce, in microbial dynamics and metabolite profiles during kimchi fermentation
We investigated the effects of jeotgal (fermented fish sauce) on kimchi fermentation, with or without saeu-jeot and myeolchi-jeot. Bacterial community analysis showed that Leuconostoc, Weissella, Lactobacillus, and Tetragenococcus were the dominant genera; however, their succession depended on the p...
2019-02-07 | MTBLS654 | MetaboLights
MetabolomicsThe Green Tea Modulates Large Intestinal Microbiome and Exo/Endogenous Metabolome altered through Chronic UVB-exposure (Endogenous assays)
The attenuating effects of green tea supplements (GTS) against the ultraviolet (UV) radiation induced skin damages are distinguished. However, the concomitant effects of GTS on the large intestinal microbiomes and associated metabolomes are largely unclear. Herein, we performed an integrated microbi...
2018-09-14 | MTBLS527 | MetaboLights
ProteomicsWblC- and tetracycline-dependent shifts in the composition of Streptomyces coelicolor ribosomal proteome
WblC, also known as WhiB7, is a widely conserved WhiB-like transcription factor in actinomycetes that activates transcription of many targets upon antibiotic challenge to bring about intrinsic resistance to a wide range of translation-targeting antibiotics. As we found that WblC controls many genes ...
ORGANISM(S): Streptomyces coelicolor A3(2) 
2020-05-27 | PXD015538 | Pride
Streptomyces coelicolor Ribosome Whib7 Wblc Antibiotic stress 
TranscriptomicsAnti-Stress Effect of Red Ginseng via Repression of PADI4 by ER-beta Stimulation
Ginseng has been used for anti-stress agents, and its active ingredient, ginsenoside, has similar structure with estrogen. In this study, effects of red ginseng (RG) on gene expressions in immobilization (IMO) stressed mice brain was analyzed by system biology.
ORGANISM(S): Mus musculus 
2012-03-01 | E-MTAB-856 | biostudies-arrayexpress
ProteomicsLC-MSMS analysis in Arabidopsis thaliana
Spliceosome dephosphorylation is essential control step that enables intron removal from pre-mRNA for the regulation of gene expression. However, the phosphatase that is biologically responsible has not been identified. Here we show that PP2A B́ η, a B subunit of PP2A phosphatase, associates with sp...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-06-02 | PXD047933 | Pride
Lc-msms A. thaliana Phosphorylation 
OtherDiscovery of melanotransferrin as a serological marker of colorectal cancer by secretome analysis and quantitative proteomics.
Data from PeptideAtlas, [[http://www.peptideatlas.org/PASS/PASS00565 PASS00565]]. File: 100521_HCT-116_OG11.mzml. Published as part of . From the Abstract: {{i}} In order to discover serological colorectal cancer (CRC) markers, we analyzed cell line secretome to gather proteins of higher potential ...
ORGANISM(S): Homo_sapiens_viruses, Cow,human 
GPM11210029831 | GPMDB
GenomicsThese are from Korean HCC samples with exome sequencing
Hepatic resection is the most curative treatment option for early-stage hepatocellular carcinoma, but is associated with a high recurrence rate, which exceeds 50% at 5 years after surgery. Understanding the genetic basis of hepatocellular carcinoma at surgically curable stages may enable the identif...
EGAS00001000604 | EGA
TranscriptomicsProfiling of microRNA expression in hepatocellular carcinoma cells with overexpression of G protein alpha 12 active mutant
Heterotrimeric guanine nucleotide-binding proteins (G proteins) transmit extracellular signals from cell surface G protein-coupled receptors to intracellular effector molecules. Attention has been paid to the GM-NM-112 family members because they mediate cell invasion, migration, and tumorigenesis. ...
ORGANISM(S): Homo sapiens 
2014-02-04 | E-GEOD-44079 | biostudies-arrayexpress
TranscriptomicsStreptomyces coelicolor A3(2) SigR regulon
We determined the genomic locations of the SigR binding sites by chromatin immuno-precipitation of cross-linked DNA and hybridization on a tilling oligonucleotide array after 20 minutes of diamide treatment on cell cultures. Three independent biological samples were prepared separately from the wild...
ORGANISM(S): Streptomyces coelicolor A3(2) 
2012-06-02 | E-GEOD-33593 | biostudies-arrayexpress
ProteomicsnextPP for chromosome-based proteomic research using neXtProt and GENCODE databases
In this study, we introduce a streamlined pipeline using customized and concatenated GENCODE and neXtProt databases with controlled false discovery rate (FDR) for finding GENCODE ASVs and missing proteins while mapping onto single amino acid variants (SAAVs) from Hippocampal dataset.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-07-25 | MSV000081385 | MassIVE
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