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GenomicsYersinia pestis KIM D27
Yersinia pestis KIM D27 genome sequencing project
PRJNA41469 | ENA
UnknownTopBP1 deficiency impairs V(D)J recombination during lymphocyte development.
Not available
S-EPMC3989616 | biostudies-literature
ProteomicsIn-depth serum proteomics of hospitalized COVID-19 patients and PCR-negative healthy controls with HiRIEF LC-MS/MS
We performed in-depth MS-based plasma-proteome profiling in 20 hospitalised patients with COVID-19 and 7 healthy controls (PCR- and sero-negative for SARS-CoV-2) by high-resolution isoelectric focusing (HiRIEF) coupled with liquid chromatography and mass-spectrometry (LC-MS/MS). The SARS‐CoV‐2 PCR‐c...
ORGANISM(S): Homo sapiens (Human) 
2023-09-01 | PXD037486 | Pride
Covid-19 Human Serum Plasma Sars-cov-2 Hirief Lc-ms/ms 
ProteomicsSplit-TurboID with Bre5 and Rps2 in Saccharomyces cerevisiae
The in vivo labeling technique Split-Biotin identification (Split-BioID, De Munter et al., 2017, Schopp et al., 2017, Cho et al., 2020) was used to capture the common microenvironment of Bre5 and the ribosomal protein Rps2 (uS5). Biotinylated proteins were enriched from cell lysates using affinity p...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-11-10 | PXD028879 | Pride
Split-turboid Rps2 Split-bioid Us5 Silac Saccharomyces cerevisiae Ribosome Bre5 
UnknownThe usefulness of flexible cystoscopy for preventing double-J stent malposition after laparoscopic ureterolithotomy.
Not available
S-EPMC5472879 | biostudies-literature
ProteomicsProxiomes of the greenbeard proteins SmDOC1 and SmDOC2 in the filamentous fungus Sordaria macrospora
In this study, we used the in vivo proximity labeling biotin identification (BioID; Roux et al., 2012) method to capture proteins of the microenvironment of the greenbeard determinant of communication (DOC) proteins SmDOC1 and SmDOC2 in the filamentous fungus Sordaria macrospora. The genes Smdoc1 (S...
ORGANISM(S): Sordaria macrospora 
2026-08-19 | PXD069539 | Pride
Sordaria macrospora Turboid Proximity labeling Bioid Determinant of communication 
ProteomicsQuantitative Rps2 BioID to monitor Asc1-dependent rearrangement at the head region of the 40S ribosome
In a previous study we applied a quantitative proximity-labeling technique called Biotin Identification (BioID, Roux et al., 2012) to analyze the microenvironment of the Gβ-like scaffold protein Asc1 (Opitz et al., 2017). The WD40-repeat protein Asc1 binds to the head region of the small 40S ribosom...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2019-11-07 | PXD015611 | Pride
Asc1 Bre5 Sro9 Bioid Def1 Stm1 Rps2 Silac Ribosome Rps3 Translation Ubp3 Saccharomyces cerevisiae Vps30 
ProteomicsProximity labeling of the SmSTRIPAK complex in Sordaria macrospora using the SCI1 subunit as bait to identify its SmSTRIPAK-dependent microenvironment
In this study, we used the in vivo proximity labeling biotin identification (BioID; Roux et al., 2012) method to capture proteins of the microenvironment of the striatin interacting kinase and phosphatase complex of the filamentous fungus Sordaria macrospora (SmSTRIPAK). For that, the TurboID biotin...
ORGANISM(S): Sordaria macrospora 
2026-08-19 | PXD069198 | Pride
Sordaria macrospora Turboid Stripak Proximity labeling Bioid 
TranscriptomicsTranscriptional profiling of hepatic stellate cells (HSCs) isolated from Western diet/high fructose-fed C57BL6/J mice, carbon tretrachloride (CCl4)-treated C57BL6/J mice, and of murine HSCs differentiated in vitro
Hepatic stellate cells are involved in the development of hepatic fibrosis. We here perform transcriptional profiling of hepatic stellate cells (HSCs) isolated from Western diet/high fructose-fed C57BL6/J mice, carbon tretrachloride (CCl4)-treated C57BL6/J mice, and of murine HSCs differentiated in ...
ORGANISM(S): Mus musculus 
2019-04-07 | E-MTAB-7054 | biostudies-arrayexpress
UnknownClinical significance of fragmented QRS complexes or J waves in patients with idiopathic ventricular arrhythmias.
Not available
S-EPMC5919047 | biostudies-literature
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