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MetabolomicsAn Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)
Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...
2016-11-18 | MTBLS350 | MetaboLights
ProteomicsLabel-free Quantitative Proteomics Approach to Unravel the Jerusalem artichoke (Helianthus tuberosus L.) Tuber
The present research investigates a ‘medicinal’ plant Jerusalem artichoke (abbreviated as JA) (Helianthus tuberosus L.) tuber proteome with an aim to unravel its proteome using a high-throughput proteomics technique. Although JA has been historically know to the Native Americans, it was brought back...
ORGANISM(S): Helianthus tuberosus 
2022-02-21 | PXD030744 | Pride
Type 2 diabetes mellitus Solid-phase extraction Jerusalem artichoke Lc-ms/ms 
MetabolomicsA Multi-Omics Analysis of Glycine max Leaves Reveals Alteration in Flavonoid and Isoflavonoid Metabolism Upon Ethylene and Abscisic Acid Treatment
Phytohormones are central to plant growth and development. Despite the advancement in our knowledge of hormone signaling, downstream targets, and their interactions upon hormones action remain largely fragmented, especially at the protein and metabolite levels. With an aim to get new insight into th...
2018-09-20 | MTBLS531 | MetaboLights
ProteomicsIntegrated analyses of shotgun proteomics and metabolomics reveal its association with rise of secondary metabolites of warm water imbibition soybean seeds
For production of soy-foods or supplements, imbibition of soybean seeds in the water is required step for generation of tofu, soy-milk, and other soy-products. With an aim to get new insight into effects of different imbibition temperature (4, 25, and 55℃), this study conducted integrated proteomics...
ORGANISM(S): Glycine max 
2020-09-25 | PXD014152 | Pride
Perseus Imbibition Basic ph reversed phase Tandem mass tag Shotgun proteomics Maxquant Soybean seed Filter-aided sample preparation Isoflavone 
ProteomicsCytosolic and plasma membrane proteome analysis of rice leaves in response to MSP1 treatment
MSP1 is a Magnaporthe oryzae secreted protein that elicits defense responses in rice. However, the molecular mechanism of MSP1 action is largely elusive. Here, we employed a TMT-based quantitative proteomic analysis of cytoplasmic as well as plasma membrane proteins to decipher the MSP1 induced sign...
ORGANISM(S): Oryza sativa (Rice) 
2019-08-30 | PXD014758 | Pride
Msp1 Rice Tmt Plasma membrane Plant-pathogen interaction Pamp 
ProteomicsProteomic profiling for elucidating the molecular mechanism in early seed development in rice
Understanding the molecular mechanisms underlying early seed development is important for improving grain yield and quality in crop plants. To investigate the molecular mechanisms that occur during early seed development, we performed comparative label-free quantitative proteomic analysis on develop...
ORGANISM(S): Oryza sativa (Rice) 
2023-12-05 | PXD043162 | Pride
Rice Early seed development Ctp synthase Proteomic profiling Mcm proteins Protein stability 
ProteomicsProteome analysis of rice seeds during artificial aging treatment for understanding the role of antioxidant machinery
Seed longevity is a crucial trait in agriculture as it determines the ability of seeds to maintain viability during dry storage. However, the molecular mechanism underlying seed aging and reduced seed longevity are currently not well understood. Here we report the comparative proteome and metabolome...
ORGANISM(S): Oryza sativa (Rice) 
2024-01-10 | PXD043955 | Pride
Rice Aging Longevity Proteomics Seeds 
ProteomicsProteomic analysis of Glycine max seeds during controlled deterioration treatment
Controlled deterioration treatment (CDT) negatively affects the seed quality and vigor during post-harvest storage. A label-free proteomic approach was utilized to understand the CDT responses in soybean seeds. Soybean seed are rich in seed-storage proteins (SSPs) constituting up to 70 to 80% of the...
ORGANISM(S): Glycine max 
2017-10-10 | PXD006064 | Pride
Quantitative proteomics Cdt Low-abundance proteins Metabolic engineering Soybean Abundant protein depletion 
ProteomicsOptimization of Protein Isolation and Label–free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng
Korean ginseng is one of the most valuable medicinal plants worldwide. Yet, our understanding of ginseng proteomics is largely limited due to difficulties in extraction and resolution of ginseng proteins because of the presence of natural contaminants such as polysaccharides, phenols, and glycosides...
ORGANISM(S): Panax ginseng 
2021-09-07 | PXD022914 | Pride
Label–free proteomics Mva pathway Panax ginseng Ginsenosides  cytochromes p450 Mep pathway Tca/acetone Udp–glycosyltransferase Methanol/chloroform 
ProteomicsProteomic analysis of Panax ginseng leaves subjected to salinity stress
Ginseng is an important crop in East Asia due to its medicinal and nutritional benefits originating from ingredients such as the ginsenosides. Numerous researches have been directed to cultivate ginseng with high yield especially targeting its growth and development for protection against abiotic st...
ORGANISM(S): Panax ginseng 
2023-03-11 | PXD038524 | Pride
Shotgun proteomics Glycosyl hydrolase 17 Salt stress Transgenic Panax ginseng 
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