Lc-msms analysis

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Proteomics (3102)
Metabolomics (167)
Other (62)
Unknown (39)
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Genomics (3)

Organisms

Homo sapiens (184)
Mus musculus (76)
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Arabidopsis thaliana (6)
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Rattus rattus (5)
Drosophila melanogaster (4)
Penicillium oxalicum 114-2 (4)
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Trichoderma reesei QM6a (2)
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 (2)
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Citrobacter freundii complex (1)
Escherichia coli ATCC 25922 (1)
Klebsiella pneumoniae ATCC 43816 (1)
Paracoccus denitrificans PD1222 (1)
Aeromonas veronii (1)

Repository

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Tissue

Cell culture (482)
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Whole body (38)
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Disease

Disease free (69)
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Not Available (32)
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Acute myeloid leukemia (10)
Melanoma (8)
Cardiovascular system disease (8)
Amyotrophic lateral sclerosis (8)
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Neuroblastoma (7)
Pancreatic cancer (7)
Malaria (7)
Severe acute respiratory syndrome (6)
Pancreatic ductal adenocarcinoma (6)
Chronic myeloid leukemia (6)
Alzheimer's disease (6)
Malignant neoplasm of ovary (6)
Wounds and Injuries (6)
Hepatocellular carcinoma (5)
Non-small cell lung carcinoma (5)
Chagas disease (5)
Glioblastoma (5)
COVID-19 (5)

Technology Type

Mass Spectrometry (2190)
Shotgun proteomics (1221)
Bottom-up proteomics (395)
Affinity purification coupled with mass spectrometry proteomics (276)
Data-dependent acquisition (231)
Gel-based experiment (181)
Data-independent acquisition (120)
Mass spectrometry (85)
Mass spectrometry assay (73)
Top-down proteomics (70)
SWATH MS (56)
Chemical cross-linking coupled with mass spectrometry proteomics (26)
SRM/MRM (21)
DiaPASEF (16)
Affinity proteomics (10)
All-ion fragmentation (8)
Immunopeptidomics (7)
MSE (7)
Metaproteomics (4)
Proteogenomics (4)
Mass spectrometry imaging (4)
RNA mass spectrometry (3)
NMR spectroscopy (2)
HDMSE (2)
Shotgun-MS (1)
Mass spectrometry (1)

Instrument Platform

Q Exactive (113)
Orbitrap Fusion Lumos (76)
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Instrument (32)
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MS:1000031 (6)
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MicrOTOF-Q II (2)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
6545 Quadrupole Time-of-Flight LC/MS (Agilent Model) (1)
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LCQ Fleet (1)
Orbitrap ID-X (1)

Publication Date

2025 (435)
2022 (389)
2023 (365)
2024 (364)
2021 (325)
2026 (286)
2020 (263)
2019 (207)
2018 (179)
2017 (136)
2016 (106)
2014 (83)
2015 (66)
2013 (27)
2012 (11)
2009 (8)
2010 (6)
2011 (2)
2008 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

H2B1D_HUMAN (4)
UBB_HUMAN (4)
H2AJ_HUMAN (4)
RB11A_HUMAN (4)
PSB3_HUMAN (4)
PSA2_HUMAN (4)
KAP0_HUMAN (4)
GALT2_HUMAN (4)
EF1G_HUMAN (4)
PGAM1_HUMAN (4)
ALBU_HUMAN (4)
PSA4_HUMAN (4)
IF4A1_HUMAN (4)
K2C4_HUMAN (4)
MDHC_HUMAN (4)
FAM3C_HUMAN (4)
TRFL_HUMAN (4)
A4_HUMAN (4)
HS90B_HUMAN (4)
PSB1_HUMAN (4)
MYH3_HUMAN (4)
SPTN1_HUMAN (4)
G6PI_HUMAN (4)
LEG3_HUMAN (4)
POTEJ_HUMAN (4)
TCPB_HUMAN (4)
TPIS_HUMAN (4)
IF2B_HUMAN (4)
G3P_HUMAN (4)
HEXA_HUMAN (4)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000247315 (3)
ENSG00000229353 (2)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17596 (24)
CHEBI:16750 (22)
CHEBI:16704 (22)
CHEBI:17562 (20)
CHEBI:15891 (20)
CHEBI:16919 (20)
CHEBI:16335 (19)
CHEBI:15354 (19)
CHEBI:17368 (19)
CHEBI:16040 (18)
CHEBI:16708 (18)
CHEBI:16566 (17)
CHEBI:16393 (17)
CHEBI:18211 (17)
CHEBI:17775 (17)
CHEBI:17568 (16)
CHEBI:30915 (16)
CHEBI:16914 (16)
CHEBI:18257 (15)
CHEBI:15760 (15)
CHEBI:15741 (15)
CHEBI:68433 (15)
CHEBI:17154 (15)
CHEBI:7916 (15)
CHEBI:17750 (15)
CHEBI:24813 (15)
CHEBI:16737 (15)
CHEBI:16020 (15)
CHEBI:17992 (14)
CHEBI:46961 (14)

Metabolite Name

Adenosine (30)
Guanosine (29)
Creatine (28)
Spermidine (27)
Oleamide (26)
Indole (25)
Taurine (24)
Adenine (24)
Inosine (24)
Hypoxanthine (24)
L-Histidine (23)
L-Tryptophan (23)
L-Tyrosine (23)
L-Phenylalanine (23)
Choline (22)
Guanine (22)
Betaine (21)
Cytidine (21)
Uridine (21)
L-Carnitine (21)
L-Proline (20)
Phytosphingosine (20)
Pantothenic acid (20)
Sphinganine (20)
Cytosine (20)
Thymidine (20)
Sphingosine (19)
Riboflavin (19)
Uracil (18)
L-Lysine (18)

First Public Date

2014 (1)

Modification

15.994915 (9)
57.021464 (8)
2x(15)N labeled L-lysine (7)
4x(15)N labeled L-arginine (5)
-17.026549 (4)
42.010565 (4)
N6 (3)
4 (3)
4-tetrahydrothiazine-3-carboxylic acid (3)
45.029395 (2)
71.037114 (2)
26.01565 (1)
Methionine (1)
3'' (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(2)H labeled dimethylated residue (1)
-18.010565 (1)
58.005479 (1)
6x(2)H labeled dimethylated L-arginine (1)
57.02146 (1)
15.99491 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (5)
Proteomic profiling by mass spectrometer (2)
ChIP-seq (2)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2021 (10)
2009 (8)
2020 (7)
2019 (6)
2010 (6)
2024 (6)
2014 (5)
2012 (5)
2023 (4)
2015 (4)
2016 (3)
2011 (3)
2022 (3)
2017 (3)
2013 (2)
2008 (2)
2006 (1)
2025 (1)
2018 (1)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (21)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (12)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (10)
Proteomics Core Facility, School of Science, National and Kapodistrian University of Athens, Athens, Greece (9)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (7)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (7)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (6)
School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK (6)
Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA (6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (5)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (5)
Dept. Proteomics and Signal Transduction Director at the Max-Planck Institute of Biochemistry (5)
ETH Zürich Institute of Molecular Systems Biology HPM F43 Otto-Stern-Weg 3 8093 Zürich Switzerland (5)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (5)
Center for Reproductive Evolution, Biology Department, Syracuse University (5)
University of Bristol (5)
University of Liverpool (5)
Wellcome Trust Sanger Institute (5)
BMI, Faculty of Medicine, University of Ottawa, Canada (5)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (4)
School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (4)
Faculty of Life Science, University of Manchester, United Kingdom (4)
Genomics Research Center, Academia Sinica, Taipei, Taiwan (4)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (4)
Centre de Recherche en Cancérologie de Marseille, CRCM Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes 27 Boulevard Leï Roure CS30059 13273 Marseille Cedex 09 France (4)

Tags

xref:PubMed:19536202 (1)

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Lipidomic analysis of Drosophila on different sugar feeding regimes +/- trametinib

Consumption of sugar-rich diets adversely affects health and reduces life expectancy through the excessive production and storage of triacylglycerides (TAGs) leading to metabolic dysfunction. Here, using Drosophila melanogaster, we identify the conserved Ras/MAPK signalling pathway as a key media...

2026-09-02 | MTBLS14468 | MetaboLights

ABRF PRG 2012: Longitudinal QC in Routine Peptide LC-MS/MS Analyses

Questions concerning data quality and reproducibility of proteomic laboratories spurred the ABRF-PRG group to design a study to systematically assess the reproducibility of proteomic laboratories. Sixty four participants were recruited from the broader mass spectrometry community and were asked to ...

ORGANISM(S): Bos Taurus (ncbitaxon:9913)

2015-04-28 | MSV000079117 | MassIVE

Dilute, derivatise and shoot: Measurement of urinary free metanephrines and catecholamines as ethyl derivatives by LC-MSMS.

Not available

S-EPMC11322754 | biostudies-literature

Site-Specific Glycan Microheterogeneity Evaluation of Aflibercept Fusion Protein by Glycopeptide-Based LC-MSMS Mapping.

Not available

S-EPMC9569749 | biostudies-literature

Kmc project LC-MSMS CID70 CID35 2025

Mass screening of crude extracts prepared from Actinokineospora auranticolor fermentation and LC-MSMS data acquisition for structure analysis.

ORGANISM(S): Actinokineospora Auranticolor (ncbitaxon:155976)

2025-02-22 | MSV000097194 | MassIVE