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MetabolomicsAn LCMS-based untargeted metabolomics protocol for cochlear perilymph: highlighting metabolic effects of hydrogen gas on the inner ear of noise exposed Guinea pigs

INTRODUCTION: Noise-induced hearing loss (NIHL) is an increasing problem in society and accounts for a third of all cases of acquired hearing loss. NIHL is caused by formation of reactive oxygen species (ROS) in the cochlea causing oxidative stress. Hydrogen gas (H2) ...

2021-10-06 | MTBLS2418 | MetaboLights
ProteomicsProteomics on post-mortem human brain tissue of patients with Alzheimer`s, Parkinson`s and Lewy body dementias, Brodmann areas (BA) 9, 24 and 40.
We have used HiRIEF (High Resolution Isoelectric Focusing) LC-MS proteomics (Branca et al., 2014, PMID: 24240322) with isobaric tags (TMT10plex) to compare 32 post-mortem human brains in the prefrontal cortex (Brodmann areas 24 and 40) of prospectively followed patients with Alzheimer`s disease (AD)...
ORGANISM(S): Homo sapiens (Human) 
2024-06-10 | PXD047324 | Pride
Human Post-mortem Alzheimer Brain Lewy body dementia Tmt Autopsy Parkinson Brodmann area Hirief Lcms proteomics 
ProteomicsInteraction Metabolomics to Uncover Synergists in Natural Product Mixtures - LCMS Raw Data of Simulated Natural Products Mixtures
This file contains the LCMS raw data collected from Thermo Q Exactive Plus instrument and all files are in Thermo RAW files format.
ORGANISM(S): Not Applicable 
2022-06-03 | MSV000089598 | MassIVE
ProteomicsLCMS quantification of internal crosslink in WT and G68L mutant R2lox proteins from Geobacillus kaustophilus.
A heterobimetallic Mn/Fe cofactor is found in the R2 subunit of class Ic ribonucleotide reductases (R2c) and R2-like ligand-binding oxidases (R2lox). Although the protein-derived metal ligands are the same in both groups of proteins, the connectivity of the two metal ions and the chemistry each cofa...
ORGANISM(S): Geobacillus kaustophilus 
2019-10-31 | PXD015549 | Pride
Ferritin  metalloprotein  ribonucleotide reductase  r2-like ligand-binding oxidase  r2lox  crosslink 
ProteomicsVendor raw files for leucine supplementation in STZ-induced T1DM mice
Vendor raw LC-MS/MS data and supporting files for the study "Leucine supplementation modulates lipid metabolism in STZ-induced type 1 diabetic mice". Waters Xevo G2-XS QTOF with ACQUITY BEH C18 column in positive ESI mode. Structured metadata, and the full LCMS protocol are included. Raw vendor file...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2025-10-03 | MSV000099368 | MassIVE
ProteomicsNature Communications manuscript NCOMMS-22-26923A
Non-invasive electromechanical assessment during atrial fibrillation identifies underlying atrial myopathy alterations with early prognostic value. Nature Communications manuscript NCOMMS-22-26923A
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2023-10-24 | PXD043016 | Pride
Lcms raw files 
ProteomicsStop trashing your spectra! Use a “Quantify then Identify” pipeline based on machine learning to maximize your isobaric tagging data
Being inspired by metabolomic data processing, we have developed a bioinformatic pipeline that optimizes the processing of mass spectral data obtained from isobaric Tandem Mass Tag (TMT) experiments. Our method focuses on the tandem mass spectral level by first quantifying and then identifying (QtI)...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2018-05-01 | PXD005206 | Pride
Plasma Isobaric tagging Tmt Human Lc-ms Csf 6-plex Orbitrap 
MetabolomicsGNPS - Interaction Metabolomics to Uncover Synergists in Natural Product Mixtures - LCMS Raw Data of Simulated Natural Products Mixtures
This file contains the LCMS raw data collected from Thermo Q Exactive Plus instrument and all files are in Thermo RAW files format.
ORGANISM(S): Not Applicable 
2022-06-03 | MSV000089598 | GNPS
MetabolomicsSingle cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch

Raw MS data files for the CaCo02 and HT29-MTX single cells isolated using the Yokogawa SS2000 for the research article 'Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch' 

2026-03-18 | MTBLS14074 | MetaboLights
ProteomicsRaw data for the characterization of a Pseudomonas putida malonyl-ACP decarboxylase
Raw data for top down LCMS for detecting modifications on recombinant proteins, and GCMS for fatty acid methyl ester analysis. Sample nomenclature is summarized in the Powerpoint and PDF files. Details of experiments are given in the associated manuscript.
ORGANISM(S): Pseudomonas Putida Kt2440 (ncbitaxon:160488) 
MSV000090294 | MassIVE
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