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TranscriptomicsComparative Transcriptomic Analysis of Salmonella in Desiccation
To explore the mechanisms of Salmonella desiccation resistance, we studied the transcriptomic responses in Salmonella Tennessee (Tennessee), using S. Typhimurium LT2 (LT2), a strain weakly resistant to desiccation, as a reference strain. In response to 2 h air-drying at 11% equilibrated relative hum...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Tennessee 
2013-01-01 | E-GEOD-40146 | biostudies-arrayexpress
TranscriptomicsIdentification of microRNAs involved in cold stress response in grapevine.
Two small RNA libraries were generated from micropropagated â??Muscat Hamburgâ?? (Vitis vinifera) plantlets under normal and low temperatures (4 °C). A total of 163 known miRNAs and 299 putative novel miRNAs were detected from two small RNA libraries by Solexa sequencing. Forty-four cold-inducible ...
ORGANISM(S): Vitis vinifera 
2016-06-14 | E-GEOD-68970 | biostudies-arrayexpress
ProteomicsMethylcobalamin protects against liver failure via engaging gasdermin E
To probe the binding sites of MeCbl on GSDME, 0.4 μM recombinant human GSDME (CSB-EP006766HU) purchased from CUSABIO (Wuhan, China) was incubated with 10 μM MeCbl in 100 μL buffer (20 mM HEPES, 150 mM NaCl and 50 μM DPA) at room temperature for 2 h and protected from light. 0.4 μM recombinant human ...
ORGANISM(S): Homo Sapiens 
2024-11-11 | PXD057768 |
TranscriptomicsIdentification of miRNAs and their target genes in developing maize ears by deep sequencing
In plants, MicroRNAs (miRNAs) are a new class of endogenous small RNAs that play essential regulatory roles in plant growth, development and stress response. Extensive studies of miRNAs have been performed in model plants such as rice, Arabidopsis thaliana and other plants. However, the number of mi...
ORGANISM(S): Zea mays 
2014-10-22 | E-GEOD-47837 | biostudies-arrayexpress
GenomicsComparison of the genome-wide DNA methylation profiles between fast-growing and slow-growing broilers
Chicken growth traits are important in poultry production, however, little is known for its regulatory mechanism at epigenetic level. Therefore, this study aims to compare DNA methylation profiles between fast- and slow-growing broilers in order to identify candidate genes underlying chicken growth....
ORGANISM(S): Gallus gallus 
2012-12-06 | E-GEOD-42751 | biostudies-arrayexpress
TranscriptomicsB-type lamins differentially associate with specific genes during differentiation without directly affecting their expression
B-type lamins, the major structural component of the nuclear lamina, is thought to play a repressive role in the expression of many of its bound genes whose silencing are known to be critical for cell differentiation during early development. Using global mapping of lamin-B-chromatin interaction, w...
ORGANISM(S): Mus musculus 
2011-10-31 | E-GEOD-24532 | biostudies-arrayexpress
ProteomicsNano-HPLC-MS/MS analysis for proteins encoded by circRNA in myoblasts and myotubes
The MS/MS spectra were searched against a custom protein database from span back-splice junction circRNA open reading frame prediction.
ORGANISM(S): Gallus Gallus 
2020-08-21 | PXD021030 |
ProteomicsRNA Pull-Down identifies the interactive proteins with tRF-Gln-CTG-026 in HL-7702 and AML12 cells
RNA Pull-Down identifies the interactive proteins with tRF-Gln-CTG-026 in HL-7702 and AML12 cells
ORGANISM(S): Homo Sapiens Mus Musculus 
2022-04-08 | PXD033097 |
ProteomicsCyclic immonium ion of lactyllysine reveals widespread lactylation in the human proteome
Here we employed a non-enzymatic chemical labeling approach to introduce lactylation on lysine residues of model peptides and proteins. Tandem MS acquisition of lactylated peptide carriers on different MS platforms unequivocally led us to note an intense peak corresponding to the “cyclic” immonium ...
ORGANISM(S): Homo Sapiens 
2021-09-15 | PXD028488 |
Proteomics[HPP-2.0] Motif-dependent immune co-receptor interactome profiling by photoaffinity chemical proteomics
Phosphotyrosine Motif-dependent synthetic CD28 interactome
ORGANISM(S): Homo Sapiens 
2024-02-06 | PXD049270 |
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