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GenomicsFoxa2 and H2A.Z Mediate Nucleosome Depletion during Embryonic Stem Cell Differentiation
We determine the mechanisms that control global nucleosome dynamics during embryonic stem (ES) cell differentiation into endoderm
ORGANISM(S): Mus musculus 
2012-12-24 | E-MTAB-1302 | biostudies-arrayexpress
TranscriptomicsFoxa2 and H2A.Z Mediate Nucleosome Depletion during Embryonic Stem Cell Differentiation - gene expression
We determine the mechanisms that control global nucleosome dynamics during embryonic stem (ES) cell differentiation into endoderm. Three cell types (ES, pEHP, and EHP) were assayed for RNA expression levels.
ORGANISM(S): Mus musculus 
2013-01-24 | E-MTAB-1308 | biostudies-arrayexpress
ProteomicsMS analysis of anti-Senp7 pulldown in adipocytes
To identify the function of Senp7 in adipocytes, we conducted a pulldown aasay and mass spectrometry analysis to identify proteins that interacted with Senp7.
ORGANISM(S): Mus musculus (Mouse) 
2024-06-16 | PXD043479 | Pride
Senp7 Adipocyte 
GenomicsHistone variants and modification in T-47D cells
To investigate the impact of histone variants and modification on gene regulation, we report high-throughput profiles of six histone markers, H2A.Z, H3K4me2, H3K9me3, H3K27me3, H3K27ac, and H3K36me3, by ChIP-Seq in T-47D breast cancer cells. Libraries were sequenced with the Illumina HiSeq 2000 anal...
ORGANISM(S): Homo sapiens 
2016-04-06 | E-GEOD-63109 | biostudies-arrayexpress
GenomicsThe Nucleosome Map of the Mammalian Liver
We report the genome-wide map of nucleosome positions in the mouse liver, with emphasis on transcriptional start sites, CpG islands, Foxa2 binding sites, and their correlation with gene expression. Despite the heterogeneity of liver tissue, we could clearly discern the nucleosome pattern of the pred...
ORGANISM(S): Mus musculus 
2011-04-30 | E-GEOD-26729 | biostudies-arrayexpress
UnknownTe/SnS2 tunneling heterojunctions as high-performance photodetectors with superior self-powered properties.
Not available
S-EPMC9552753 | biostudies-literature
ProteomicsThe supernatant of the culture medium of adipocytes LC-MSMS
Abdominal aortic aneurysm (AAA) is a life-threatening vascular disease without effective medical therapies. Emerging evidences have suggested a crosstalk between adipose tissue and vascular cells and brown adipose tissue is beneficial for cardiovascular health. Nevertheless, whether brown remodeling...
ORGANISM(S): Mus musculus (Mouse) 
2025-09-07 | PXD064197 | Pride
Mus musculus Supernatant Adipocytes Lc-msms 
UnknownFAT-5/SCD5-mediated lipid localization in lysosomes alleviates gamma radiation injury in Caenorhabditis elegans.
Not available
S-EPMC12509980 | biostudies-literature
ProteomicsGwAAP: A Genome-wide Amino Acid coding-decoding quantitative Proteomic system
GwAAP: A Genome-wide Amino Acid coding-decoding quantitative Proteomic system was designed in which each protein could be assigned with a distinct code. Using synthetic biology technology, the amino acids codes were coded in N terminal of the corresponding proteins in the genome of yeast (Saccharomy...
ORGANISM(S): Saccharomyces Cerevisiae 
2021-12-22 | PXD023100 |
ProteomicsProteome-wide profiling of Readers for DNA modification
Abstract DNA modifications, represented by methylcytosine (5mC), and its oxidized derivatives, such as hydroxymethylcytosine (5hmC), formylcytosine (5fC), and carboxylcytosine (5caC), play important roles in epigenetic regulation of biological processes. The specific recognition of DNA modifications...
ORGANISM(S): Homo Sapiens Mus Musculus 
PXD026362 |
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