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TranscriptomicsA search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation.
Analysis of the intergenic regions of Staphylococcus aureus by bioinformatics predicted multiple regulatory regions. From this analysis, we also characterized 11 novel noncoding RNAs (RsaA-K) that are expressed in several S. aureus strains under different experimental conditions. Many of them accumu...
ORGANISM(S): Staphylococcus aureus 
2010-05-18 | E-GEOD-17135 | biostudies-arrayexpress
ProteomicsDe novo BCR-ABL linear kinase motifs revealed by phosphoproteomics in yeast
Protein tyrosine phosphorylation (pY) is central to many cellular signaling pathways. Deregulation of pY can lead to malignancies such as leukemia. Thus, assigning kinase-substrate relations is imperative to understand disease alterations. However, such efforts are complicated by kinase redundancy, ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2023-07-20 | PXD038551 | Pride
Bcr-abl Ksea Phosphoproteomics Abl Linear sequence motif Protein tyrosine phosphorylation 
ProteomicsMT-MAMS: protein methyltransferase motif analysis by mass spectrometry
Protein methyltransferases can recognise their substrates through linear sequence motifs and determination of these motifs is critical to understand methyltransferase mechanism, function and drug targeting. Here we describe MT-MAMS (methyltransferase motif analysis by mass spectrometry), a quantitat...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2018-09-03 | PXD009515 | Pride
Motif Methylation Methyltransferase 
GenomicsLinear motif specificity in signaling through p38α and ERK2 mitogen–activated protein kinases
Linear motif specificity in signaling through p38α and ERK2 mitogen–activated protein kinases
PRJNA1208945 | ENA
Proteomics[HPP-2.0] Motif-dependent immune co-receptor interactome profiling by photoaffinity chemical proteomics
Phosphotyrosine Motif-dependent synthetic CD28 interactome
ORGANISM(S): Homo Sapiens 
2024-02-06 | PXD049270 |
UnknownA new protein linear motif benchmark for multiple sequence alignment software.
Not available
S-EPMC2374782 | biostudies-literature
UnknownLinear motif atlas for phosphorylation-dependent signaling.
Not available
S-EPMC6215708 | biostudies-literature
UnknownA structure filter for the Eukaryotic Linear Motif Resource.
Not available
S-EPMC2774702 | biostudies-literature
ProteomicsSystematic discovery of Short Linear Motifs decodes calcineurin phosphatase signaling
Short linear motifs (SLiMs) form dynamic protein-protein interactions essential for signaling; however, sequence degeneracy and low binding affinities make them difficult to identify. In this study, we employed multiple, unbiased systematic approaches for SLiM discovery to elucidate the regulatory n...
ORGANISM(S): Homo sapiens (Human) 
2020-12-02 | PXD017868 | Pride
Signaling Calcium Short linear motifs (slims) Nuclear pore complex (npc) Intrinsically disordered proteins (idps) Phosphatase 
ProteomicsEngineering Linear Cap-independent mRNA Vaccines with Intrinsic 1 Adjuvanticity for Potent Cancer Immunotherapy
We present 25 a streamlined linear cap-independent RNA (LciRNA) cancer vaccine platform that achieves stable 26 expression in vivo without 5’ capping or ribonucleotide modification, and innately stimulates 27 immune responses to enhance antitumor immunity. By fusing a UPA protective sequence, compos...
ORGANISM(S): Homo sapiens (Human) 
2026-01-26 | PXD067836 | Pride
Lcirna， upa 
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