Live-imaging - OmicsDI

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UNIPROT ID/AC

P06493 (1)
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CHEBI ID

CHEBI:15422 (3)
CHEBI:16027 (3)
CHEBI:15996 (2)
CHEBI:17552 (2)
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CHEBI:132674 (2)
CHEBI:132677 (2)
CHEBI:134239 (2)
CHEBI:134270 (2)
CHEBI:136186 (2)
CHEBI:136192 (2)
CHEBI:136196 (2)
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CHEBI:136210 (2)
CHEBI:136213 (2)
CHEBI:136215 (2)
CHEBI:136234 (2)
CHEBI:136239 (2)
CHEBI:136243 (2)
CHEBI:136245 (2)
CHEBI:136257 (2)
CHEBI:138566 (2)
CHEBI:141588 (2)
CHEBI:15741 (2)
CHEBI:15846 (2)
CHEBI:16084 (2)
CHEBI:167040 (2)
CHEBI:16708 (2)
CHEBI:16761 (2)
CHEBI:17489 (1)

Metabolite Name

Citrate (2)
Phosphoenolpyruvate (2)
1,5-Anhydroglucitol (1)
13Z-Docosenoic Acid (1)
15Z-Tetracosenoic Acid (1)
2-Deoxyglucose phosphate (1)
2-Hydroxybutyrate (1)
2-Oxoglutarate (1)
3-(2-HYDROXYPHENYL)PROPANOATE (1)
3-Hydroxybutyrate (1)
4Z 7Z 10Z 13Z 16Z 19Z-Docosahexaenoic Acid (1)
6-Phosphogluconate (1)
8Z 11Z 14Z-Eicosatrienoic Acid (1)
9Z 12Z-Octadecadienoic Acid (1)
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AZELAIC ACID (1)
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CE (16:1) (1)
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CE (18:1) (1)
CE (18:2) (1)
CE (20:2) (1)
CE (20:4) (1)
CE(18:1) (1)
CE(22:6) (1)
CL(32:2)_(34:2) (1)

First Public Date

2026 (88)
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2022 (39)
2021 (32)
2020 (22)
2019 (20)
2017 (15)
2018 (14)
2015 (12)
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2016 (4)
2013 (3)

Modelling Approach

Ordinary differential equation model (4)
Logical model (1)

Study status

Completed (1)

Lab affiliation

Technical University Munich, Faculty of Medicine, Institute of Virology, Viral Immunopathology, Schneckenburger Str. 8, D-81675 Munich, Germany (4)
IRIC-Université de Montréal (3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
1The Rappaport Faculty of Medicine and Research Institute, Haifa 3109601, Israel; 2Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 3200003, Israel (2)
Functional Proteomics, ICR (2)
School of Life Sciences, Queens Medical Centre, University of Nottingham, Nottingham, NG7 2UH (2)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics (2)
1) Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom 2) Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, United Kingdom (1)
1Research Institute of the McGill University Health Centre, Montreal, QC, Canada 2Department of Pathology, McGill University, Montreal, QC, Canada 3Gerald Bronfman Department of Oncology, McGill University, Montreal, QC, Canada (1)
1Université Libre de Bruxelles, Laboratory of Stem Cells and Cancer, Brussels B-1070, Belgium. 2WELBIO, Université Libre de Bruxelles, Brussels B-1070, Belgium (1)
Appel Alzheimer's Disease Research Institute Feil Family Brain and Mind Research Institute Weill Cornell Medicine New York, NY 10021 (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bastounis lab, IMIT, CMFI, University of Tübingen, Germany (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Carnegie Mass Spectrometry Facility (1)
Cell biology, neurobiology and biophysics, Utrecht University, Utrecht, Netherlands (1)
Center of Reproductive Medicine, Shengjing Hospital of China Medical University, Shenyang 110004, China; (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK (1)
Charles Perkins Centre, The University of Sydney (1)
DIADE, IRD, CIRAD, Université de Montpellier, Montpellier, France (1)
Department for Cell Biology Biomedical Center (BMC) Medical Faculty, LMU Großhaderner Straße 9, 82152 Planegg-Martinsried, Germany (1)
Department of Biochemistry and Biophysics Smilow Center for Translational Research Perelman School of Medicine University of Pennsylvania United States (1)
Department of Biochemistry and Molecular Biology, Infection and Immunity theme, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil (1)
Department of Biology, Stanford University (1)
Department of Biomolecular Medicine, Ghent University, Ghent, Belgium VIB Center for Medical Biotechnology, VIB, Ghent, Belgium (1)
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 761001, Israel (1)
Department of Chemistry, University of Illinois Chicago, Chicago, USA (1)
Department of Medicine, Vagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA (1)

Keyword

Liver Cancer (1)
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Regional Therapy (1)
SNALP (1)
Stage IV Disease (1)
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TKM-080301 (1)
Unresectable (1)

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Submitter Keywords

TransQST (1)

Classification

bacteria (2)
protozoa (1)
fungi (1)

Modification

N6 (1)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (15)
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Unknown experiment type (4)
RNA-seq of coding RNA from single cells (3)
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1998 (1)

Location

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In vivo live imaging of RNA polymerase II transcription factories in primary cells

Transcription steps are marked by different modifications of the C-terminal domain of RNA polymerase II (RNAPII). Phosphorylation of Ser5 and Ser7 by cyclin-dependent kinase 7 (CDK7) as part of TFIIH marks initiation, whereas phosphorylation of Ser2 by CDK9 marks elongation. These processes are thou...

ORGANISM(S): Mus musculus

2013-05-13 | E-GEOD-46849 | biostudies-arrayexpress

CALIPERS: Cell cycle-aware live imaging for phenotyping experiments and regeneration studies

PRJNA1184339 | ENA

Morphodynamic domains enable integration of live imaging morphometrics with spatial transcriptomics

PRJNA1454971 | ENA

Quantitative Live Cell Imaging Reveals Differential Manipulation of Rab11A Transport Pathways by Influenza virus and RSV

Assembly of infectious influenza A viruses (IAV) is a complex process involving transport from the nucleus to the plasma membrane. Rab11A containing recycling endosomes have been identified as a platform for intracellular transport of viral RNA (vRNA). Using high spatiotemporal resolution light-shee...

ORGANISM(S): Homo sapiens (Human) Influenza A virus (A/California/07/2009(H1N1))

2020-01-14 | PXD016331 | Pride

Quantitative live-cell imaging of secretion activity reveals dynamic immune responses

PRJNA1064034 | ENA

Next-generation breast organoids capture human organogenesis with high-resolution live imaging

PRJNA1146016 | ENA

Employing Sterculic Acid–a naturally occurring 1, 2-cyclopropene fatty acid–for live-cell imaging of lipids by inverse electron-demand Diels-Alder reaction

To allow the study of unsaturated free fatty acids in live cells, we here report the use of sterculic acid, a 1,2-cyclopropene containing oleic acid analogue, as a bioorthogonal probe. We here show that this lipid can be readily taken up by dendritic cells without toxic side-effects, and that it can...

ORGANISM(S): Mus musculus (Mouse)

2023-04-28 | PXD033831 | Pride

Lipidation Ptm Bioorthogonal Sterculic Cyclopropene

CALIPERS: Cell cycle-aware live imaging for phenotyping experiments and regeneration studies

We introduce CALIPERS, a Fluorescence Ubiquitin Cell Cycle Indicator enabling cell cycle-aware phenotyping based on multiplexed live-cell imaging. We validate CALIPERS in three- and four-color reporter lines (HaCaT) and human induced pluripotent stem cells (WTC-11), co-expressing genetically encoded...

ORGANISM(S): Homo sapiens

2026-06-25 | GSE281528 | GEO

A Split Luciferase Biosensing Platform for Detection and Imaging of Chromatin Loops in Individual Live Cells

PRJNA1254266 | ENA

Decoding the interplay between m6A modification and stress granule stability by live-cell imaging

PRJNA1141493 | ENA

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