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UnknownProphage protein RacR activates lysozyme LysN, causing the growth defect of E. coli JM83.
Not available
S-EPMC6715736 | biostudies-literature
ProteomicsIn vitro characterization of caspase-3 cleavage sites by LATE and HYATNE
Proteins' N-termini contain information about their biochemical properties and functions, and they can undergo co- or post-translational modifications, as well as be processed by proteases. To expand the coverage of the N-terminome, we have developed LATE (LysN Amino Terminal Enrichment), a method t...
ORGANISM(S): Homo sapiens (Human) 
2023-06-27 | PXD036593 | Pride
Late Hytane Lysn Peptidyl-lys metalloendopeptidase n-terminomics Caspase-3 
ProteomicsCell-based characterization of caspase-3 cleavage sites by LATE and HYATNE
Proteins' N-termini contain information about their biochemical properties and functions, and they can undergo co- or post-translational modifications, as well as be processed by proteases. To expand the coverage of the N-terminome, we have developed LATE (LysN Amino Terminal Enrichment), a method t...
ORGANISM(S): Homo sapiens (Human) 
2023-06-27 | PXD036648 | Pride
Late Hytane Abt199 Lysn Peptidyl-lys metalloendopeptidase n-terminomics Caspase-3 
UnknownA novel, robust peptidyl-lys metalloendopeptidase from Trametes coccinea recombinantly expressed in Komagataella phaffii.
Not available
S-EPMC10787681 | biostudies-literature
ProteomicsProteomeTools – Part III - HLA Class I & II & non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the third iteration of the generation and multimodal LC-MS/MS analysis of >305,000 synthetic non-tryptic peptides representing HLA Class ...
ORGANISM(S): Homo sapiens (Human) 
2021-04-26 | PXD021013 | Pride
Hla Aspn Hla class ii Proteometools Reference standards Hla class i Synthetic peptides Lysn 
UnknownHeterologous expression of peptidyl-Lys metallopeptidase of Armillaria mellea and mutagenic analysis of the recombinant peptidase.
Not available
S-EPMC4885931 | biostudies-literature
ProteomicsA deep proteome and transcriptome abundance atlas of 29 healthy human tissues
We generated a systematic, quantitative and deep proteome and transcriptome abundance atlas from 29 paired healthy human to serve as a molecular baseline to study human biology.
ORGANISM(S): Homo sapiens (Human) 
2019-07-10 | PXD010154 | Pride
Human proteome 
ProteomicsDeep learning the collisional cross sections of the peptide universe from a million experimental values
The size and shape of peptide ions in the gas phase are an under-explored dimension for mass spectrometry-based proteomics. To explore the nature and utility of the entire peptide collisional cross section (CCS) space, we measure more than a million data points from whole-proteome digests of five or...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Drosophila melanogaster (Fruit fly) Saccharomyces cerevisiae (Baker's yeast) Caenorhabditis elegans 
2021-01-18 | PXD019086 | Pride
Tims Technical Ccs Deep learning Ion mobility 
UnknownPrescribing behavior of antidepressants for depressive disorders: A systematic review.
Not available
S-EPMC9501861 | biostudies-literature
ProteomicsQuantifying missing (phospho)proteome regions with the broad-specificity protease subtilisin
Despite huge efforts to map the human proteome using mass spectrometry the overall sequence coverage achieved to date is still below 50%. Reasons for missing areas of the proteome comprise protease-resistant domains including the lack/excess of enzymatic cleavage sites, non-unique peptide sequences,...
ORGANISM(S): Homo sapiens (Human) 
2017-11-30 | PXD008068 | Pride
Novel phosphorylation sites Proteome coverage Pro-rich regions Alternative enzymes Trypsin Sample preparation Missing proteins 
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