Sort   by:  
 Page size 
ProteomicsProteomeTools Part IV - TMT labeled non-modified tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of >500,000 tryptic synthetic peptides labeled with tandem mass tags (TMT6plex).
ORGANISM(S): Homo sapiens (Human) 
2021-01-11 | PXD023119 | Pride
Synthetic peptide Tmt Proteometools Tandem mass tag 
ProteomicsProteomeTools Part V - TMT labeled non-modified non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of >300,000 synthetic non-tryptic peptides labeled with tandem mass tags (TMT6plex).
ORGANISM(S): Homo sapiens (Human) 
2021-04-26 | PXD023120 | Pride
Synthetic peptide Tmt Proteometools Tandem mass tag 
ProteomicsProteomeTools - Building ProteomeTools based on a complete synthetic human proteome
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the generation and multimodal LC-MS/MS analysis of >350,000 synthetic tryptic peptides representing nearly all canonical human gene produ...
ORGANISM(S): Homo sapiens (Human) 
2017-02-09 | PXD004732 | Pride
Proteometools Synthetic Srm Prm Mrm Human proteome Peptides Spectral library 
ProteomicsProteomeTools Part VI - Citrullinated peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the the generation and multimodal LC-MS/MS analysis of ~4200 tryptic and non-tryptic synthetic citrullinated peptides.
ORGANISM(S): Homo sapiens (Human) 
2025-02-11 | PXD056559 | Pride
Proteomics Prosit Mass spectrometry Citrullination Proteometools Deep learning 
ProteomicsProsit: Proteome-wide prediction of peptide tandem mass spectra by deep learning
In this study, we extended the ProteomeTools peptide library (PROPEL, see PXD004732 and PXD010595) to train a deep neural network resulting in chromatographic retention time and fragment ion intensity predictions for (tryptic) peptides that exceed the quality of the experimental data.
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) Drosophila melanogaster (Fruit fly) Caenorhabditis elegans 
2019-05-30 | PXD010871 | Pride
Dia Prosit Retention time Predicted spectra Irt Machine learning Proteometools Spectral library Synthetic peptides Dda 
ProteomicsProteomeTools
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the generation and multimodal LC-MS/MS analysis of >350,000 synthetic tryptic peptides representing nearly all canonical human gene produ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-02-10 | MSV000080544 | MassIVE
ProteomicsProteomeTools – Part III - HLA Class I & II & non-tryptic peptides
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the third iteration of the generation and multimodal LC-MS/MS analysis of >305,000 synthetic non-tryptic peptides representing HLA Class ...
ORGANISM(S): Homo sapiens (Human) 
2021-04-26 | PXD021013 | Pride
Hla Aspn Hla class ii Proteometools Reference standards Hla class i Synthetic peptides Lysn 
ProteomicsPeptide collision cross section of 22 post-translational modifications
The present study investigates the ion mobility characteristics of synthetic peptides carrying 22 different post-translational modifications by Ion Mobility-Mass Spectrometry. Samples were kindly provided by the ProteomeTools project.
ORGANISM(S): Homo sapiens (Human) 
2023-08-25 | PXD042416 | Pride
Tims Ptm Post-translational modifications Collision cross section Ccs Ion mobility 
UnknownBuilding ProteomeTools based on a complete synthetic human proteome.
Not available
S-EPMC5868332 | biostudies-literature
ProteomicsProteomeTools – Part II - Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
"The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the second iteration of the generation and multimodal LC-MS/MS analysis of >220,000 synthetic tryptic peptides representing nearly all c...
ORGANISM(S): Homo sapiens (Human) 
2019-05-21 | PXD010595 | Pride
Proteome tools" Fusion lumos "synthetic peptides Proteometools Peptide standards 
Sort   by:  
 Page size