Ma Ming M - OmicsDI

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Unknown (307)
Transcriptomics (65)
Proteomics (60)
Genomics (39)
Metabolomics (13)

Organisms

Homo sapiens (69)
Mycobacterium tuberculosis SP7 (29)
Mycobacterium tuberculosis SP10 (29)
Mycobacterium tuberculosis SP13 (29)
Mycobacterium tuberculosis SP22 (29)
Chlamydomonas reinhardtii (29)
Mus musculus (22)
Rattus norvegicus (7)
Escherichia coli (5)
Danio rerio (4)
Arabidopsis thaliana (3)
Oryza sativa (3)
Daphnia magna (2)
Saccharomyces cerevisiae (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Drosophila melanogaster (2)
Gastrodia elata (1)
activated sludge metagenome (1)
Coffea arabica (1)
Salmo salar (1)
Oncorhynchus mykiss (1)
Camellia sinensis var. assamica (1)
Rasamsonia (1)
Thermomyces (1)
Aspergillus (1)
Haemaphysalis sp. CJ-2015 (1)
Chlorocebus sabaeus (1)
Mus (1)
Fusarium sinicum (1)

Repository

biostudies-arrayexpress (68)
EGA (36)
pride (29)
iProX (28)
MetaboLights (13)
jPOST (2)
PAXDB (1)

Tissue

Cell culture (4)
Permanent cell line cell (3)
Kidney (3)
Embryonic fibroblast (2)
Plant cell (2)
Blood plasma (2)
CHO cell (1)
Aerial part (1)
Seedling (1)
Seed (1)
Shoot (1)
Early embryonic cell (1)
Macrophage (1)
Blood serum (1)
Brain (1)
Root (1)
Embryo (1)
HeLa cell (1)
Leaf (1)
Epithelial cell (1)
Liver (1)
Blood (1)

Disease

Malignant neoplasm of ovary (3)
Kidney cancer (2)
Diffuse gastric cancer (1)
Cervix carcinoma (1)
Cardiovascular system disease (1)
Type 2 diabetes mellitus (1)
Disease free (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (16)
Mass spectrometry (13)
Bottom-up proteomics (6)
Gel-based experiment (4)
Data-dependent acquisition (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II (1)
MSE (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - negative - reverse phase (5)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (4)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (4)
FastPrep‑24 homogenizer (MP Biomedicals) (3)
See manuscript (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - alternating - hilic (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Gas Chromatography MS - positive (1)
MS Imaging - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2013 (18)
2012 (15)
2021 (12)
2022 (10)
2026 (9)
2024 (9)
2023 (8)
2016 (6)
2010 (6)
2025 (6)
2015 (5)
2014 (5)
2011 (5)
2020 (3)
2019 (3)
2018 (3)
2008 (2)
2017 (2)
2009 (1)
2007 (1)

UNIPROT ID/AC

SRR1L_HUMAN (1)
VTCN1_HUMAN (1)
RPC9_HUMAN (1)
SEZ6_HUMAN (1)
ULK2_HUMAN (1)
PSMA8_HUMAN (1)
9606.ENSP00000366679 (1)
9606.ENSP00000406577 (1)
9606.ENSP00000378570 (1)
HAUS7_HUMAN (1)
DCA16_HUMAN (1)
LC7L2_HUMAN (1)
NEDD8_HUMAN (1)
CDO1_HUMAN (1)
DLRB2_HUMAN (1)
PRPS3_HUMAN (1)
DNJB8_HUMAN (1)
ASF1B_HUMAN (1)
ACBD7_HUMAN (1)
MFHA1_HUMAN (1)
ASML_HUMAN (1)
TOX3_HUMAN (1)
PSF1_HUMAN (1)
SHCBP_HUMAN (1)
9606.ENSP00000331127 (1)
RMXL2_HUMAN (1)
9606.ENSP00000291295 (1)
PABP5_HUMAN (1)
NACA2_HUMAN (1)
QRIC2_HUMAN (1)

CHEBI ID

CHEBI:16704 (5)
CHEBI:16750 (4)
CHEBI:30915 (4)
CHEBI:15756 (4)
CHEBI:17368 (4)
CHEBI:17169 (3)
CHEBI:545687 (3)
CHEBI:15713 (3)
CHEBI:17822 (3)
CHEBI:15721 (3)
CHEBI:17202 (3)
CHEBI:17858 (3)
CHEBI:16238 (3)
CHEBI:43580 (3)
CHEBI:7676 (3)
CHEBI:16870 (3)
CHEBI:14336 (3)
CHEBI:6650 (3)
CHEBI:16335 (3)
CHEBI:15891 (3)
CHEBI:16108 (3)
CHEBI:32816 (3)
CHEBI:16027 (3)
CHEBI:78320 (3)
CHEBI:16919 (3)
CHEBI:30769 (3)
CHEBI:192137 (2)
CHEBI:173312 (2)
CHEBI:180237 (2)
CHEBI:176415 (2)

Metabolite Name

Creatine (4)
Tetracosahexaenoic acid (3)
Arginine (3)
Tyrosine (3)
Uracil (3)
Sphingosine (3)
Ophthalmic acid (3)
Taurine (3)
Dibutyl phthalate (3)
Octanoylcarnitine (3)
Uric acid (3)
Guanosine (3)
Uridine (3)
Glycerophosphocholine (3)
L-Carnitine (3)
Hippuric acid (3)
Hypoxanthine (3)
Indoline (2)
17-hydroxy stearic acid (2)
13-Docosenamide (2)
Tris(2-butoxyethyl) phosphate (2)
Atractylenolide II (2)
Fukinolic acid (2)
15,16-DiHODE (2)
2,6,6-Trimethyl-2-cyclohexene-1,4-dione (2)
20-hydroxy-eicosanoic acid (2)
Isoleucylproline (2)
Adenosine 3'-monophosphate (2)
D-Ornithine (2)
Margaric acid (2)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (16)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ChIP-seq (1)

Release Date

2022 (37)
2025 (37)
2024 (36)
2021 (33)
2020 (31)
2023 (27)
2013 (26)
2019 (20)
2017 (20)
2012 (17)
2015 (16)
2016 (14)
2018 (13)
2010 (11)
2026 (10)
2011 (10)
2014 (9)
2008 (4)
2009 (3)
2007 (1)

Lab affiliation

IBC R602,128, Academia Road Sec. 2, Nankang, Taipei 115, Taiwan (3)
1. School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China 2. Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (3)
Metabolomics-Proteomics Research Center, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan (2)
Bioprocessing Technology Institute , Agency for Science, Technology and Research-A*STAR, 20 Biopolis Way 06-01, Singapore 138668, Republic of Singapore (1)
Université de Strasbourg, Architecture et Réactivité de l'ARN, Institut de biologie moléculaire et cellulaire du CNRS, 2 allée Konrad Roentgen, 67084 Strasbourg France (1)
Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Beijing, China (1)
College of Life Sciences, Capital Normal University No. 105 Xisanhuan North Road, Beijing 100048 P. R. China (1)
The University of Hong Kong, Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry (1)
School of Life Sciences and Center for Soybean Research of the State Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR (1)
National Yang-Ming University Proteomics Research Center (R648), Taipei, 112 Taiwan (ROC) (1)
School of Life Sciences and Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (1)
National Yang-Ming University, Proteomics Research Center, Taiwan (ROC) (1)
Department of Pharmacology, National Yang Ming Chiao Tung University (1)
Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences.Shenzhen 518055，China (1)
china agricultural university (1)
Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong Special Administrative Region, China (1)
National Yang-Ming University, Proteomics Research Center, Taipei City, Taiwan (1)
Department of Chemistry and Biochemistry, University of North Carolina Wilmington, Wilmington, NC, USA (1)
Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry, The University of Hong Kong (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresource, Animal Reproduction Institute, Guangxi University, Nanning, Guangxi 530004, China (1)
School of Food and Biological Engineering, Hefei University of Technology (1)
Program in Molecular Medicine, College of Life Sciences, National Yang Ming Chiao Tung University, Taipei, Taiwan (1)
The Affiliated Suzhou Hospital of Nanjing Medical University, Gusu School, Nanjing Medical University, Baita west road #16, Suzhou 215001, China. (1)
National Yang-Ming University Proteomics Research Center,Taiwan (1)

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High-Resolution Spatiotemporal Mapping of Cerebral Metabolism During Middle-Cerebral-Artery Occlusion/Reperfusion Progression: Preliminary Insights.

Not available

S-EPMC12650308 | biostudies-literature

Stomatin modulates adipogenesis through ERK pathway and regulates fatty acid uptake and lipid droplet growth

Controlling fatty acid uptake, lipid production and storage, and metabolism of lipid droplets (LDs), is closely related to lipid homeostasis, adipocyte hypertrophy and obesity. We report here that stomatin, a major constituent of lipid rafts, participates in adipogenesis and adipocyte maturation by ...

ORGANISM(S): Mus musculus (Mouse)

2022-07-05 | PXD031866 | Pride

ER-associated degradation of Eag1 potassium channels by the RING E3 ubiquitin ligase MKRN1: the presence of a dual ubiquitination system

Mutations in the human gene encoding the neuron-specific Eag1 voltage-gated K+ channel are associated with neurodevelopmental diseases, indicating an important role of Eag1 during brain development. A disease-causing Eag1 mutant channel is linked to defective protein stability that involves enhanced...

ORGANISM(S): Homo sapiens (Human)

2021-09-10 | PXD023984 | Pride

Ring e3 Mkrn1

A long noncoding RNA, lincRNA-Tnfaip3, acts as a coregulator of NF-κB to modulate inflammatory gene transcription in mouse macrophages.

Not available

S-EPMC6191062 | biostudies-literature

Proteome of Chinese Breast Cancers (FUSCC-Shao Lab)

Raw data of TMT-labeled proteome of Chinese breast cancers. Uploaded by Zhi-Ming Shao Lab, Fudan University Shanghai Cancer Center (FUSCC)

ORGANISM(S): Homo Sapiens

PXD042886 |

The dynamics of DNA methylation fidelity during mouse embryonic stem cell renewal and differentiation

Purpose: we aimed to gain a genome-wide view of the dynamics in DNA methylation inheritance and define the factors associated with methylation fidelity. Methods: Using mouse embryonic stem cell (ES-E14TG2a) in both undifferentiated and differentiated states as a model system, we exploited the hairpi...

ORGANISM(S): Mus musculus

2014-05-12 | E-GEOD-48229 | biostudies-arrayexpress

Early M-Protein Dynamics Predicts Progression-Free Survival in Patients With Relapsed/Refractory Multiple Myeloma.

Not available

S-EPMC7719372 | biostudies-literature

Gallbladder microbial species and host bile acids biosynthesis linked to cholesterol gallstone comparing to pigment individuals

Gallstones are crystalline deposits in the gallbladder that are traditionally classified as cholesterol, pigment or mixed stones based on their composition. Microbiota and host metabolism variances among the different types of gallstones remain largely unclear. Here, the bile and gallstone microb...

2024-03-11 | MTBLS7736 | MetaboLights

Maintenance of Neural Activities in Torpid Rhinolophus ferrumequinum Bats Revealed by 2D Gel-based Proteome Analysis

Bats are the only mammals capable of self-powered flying. Many bat species hibernate in winter. A reversible control of cerebral activities is critical for bats to accommodate a repeated torpor-arousal cycle during hibernation. Little is known about the molecular mechanism that regulates neuronal ac...

ORGANISM(S): Bos taurus (Bovine) Pan troglodytes (Chimpanzee) Rattus rattus (Black rat) Arabidopsis thaliana (Mouse-ear cress) Mesocricetus auratus (Golden hamster) Homo sapiens (Human) Mus musculus (Mouse) Sus scrofa domesticus (domestic pig) Rattus norvegicus (Rat) Equus caballus (Horse)

2017-05-11 | PXD005158 | Pride

Gnao1 Hibernation Palmitoylation Bats Lc-ms/ms

Pyruvate kinase M2 modification by a lipid peroxidation byproduct acrolein contributes to kidney fibrosis

This study used a proteomic approach with an anti-Acr-PC antibody followed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis to identify several acrolein-modified protein targets. Among these protein targets, pyruvate kinase M2 (PKM2) was found to be modified by acrolein at Cys35...

ORGANISM(S): Mus musculus (Mouse)

2023-05-10 | PXD040335 | Pride

Renal fibrosis acrolein pyruvate kinase m2 hypoxia-inducible factor 1-alpha hydralazine carnosine.

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484 Results

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Organisms

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Tissue

Disease

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