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TranscriptomicsmRNA-Seq of daphnia magna juveniles exposed to different sub-lethal concentrations of Fipronil in a modified acute immobilisation test below against untreated control groups
The aim of this mRNA expression profiling experiment was to screen for ecotoxicogenomic fingerprints in juvenile daphnids (daphnia magna) as aquatic vertebrate non-target model exposed to sub lethal concentrations of Fipronil. Fipronil is a widely used insecticide applied for crop protection against...
ORGANISM(S): Daphnia magna 
2021-08-04 | E-MTAB-9829 | biostudies-arrayexpress
TranscriptomicsmRNA-Seq of daphnia magna juveniles exposed to different sub-lethal concentrations of Imidacloprid in a modified acute immobilisation test below against untreated control groups
The aim of this mRNA expression profiling experiment was to screen for ecotoxicogenomic fingerprints in juvenile daphnids (daphnia magna) as aquatic vertebrate non-target model exposed to sub lethal concentrations of Imidacloprid. Imidacloprid is is a popular insecticide widely applied in agricultur...
ORGANISM(S): Daphnia magna 
2021-08-04 | E-MTAB-9830 | biostudies-arrayexpress
ProteomicsInterclonal proteomic responses to predator exposure in Daphnia magna may depend on predator composition of habitats
Phenotypic plasticity, the ability of one genotype to express different phenotypes in response to changing environmental conditions, is one of the most common phenomena characterising the living world and is not only relevant for the ecology but also for the evolution of species. Daphnia, the waterf...
ORGANISM(S): Daphnia (common water fleas) 
2015-07-03 | PXD001787 | Pride
Phenotypic plasticity Proteomics Daphnia Inducible defence Interclonal differences Label-free quantification 
TranscriptomicsSilver Nanowire Exposure Results in Internalization and Toxicity to Daphnia magna
Nanowires (NWs), high-aspect-ratio nanomaterials, are increasingly used in technological materials and consumer products and may have toxicological characteristics distinct from nanoparticles. We carried out a comprehensive evaluation of the physicochemical stability of four silver nanowires (AgNWs)...
ORGANISM(S): Daphnia magna 
2013-12-31 | E-GEOD-47064 | biostudies-arrayexpress
TranscriptomicsSingle-cell RNAseq and scTCRseq of human CD8 T cells from blood and skin compartments in Dengue patients
Using a skin-blister induction model established for dengue, we investigated the transcriptional signatures and TCR repertoire of matched CD8 T cells in skin and blood samples
ORGANISM(S): Homo sapiens 
2026-04-14 | E-MTAB-16332 | biostudies-arrayexpress
ProteomicsImproving the proteome coverage of Daphnia magna
To improve proteome coverage in Daphnia, we established an easy-to-use procedure based on the LC-MS/MS of whole daphnids and dissected daphnia guts separately. Using a comprehensive spectral library, generated by gas-phase fractionation (GPF) and a data-independent acquisition method, we identified ...
ORGANISM(S): Daphnia magna Sus scrofa domesticus (domestic pig) 
2022-11-17 | PXD029198 | Pride
Dia Mass spectrometry Gut Aquatic pollution Ecotoxicoproteomics Daphnia 
TranscriptomicsGene expression profiling of Daphnia magna exposed to AgNO3 and AgNP
Custom D. magna gene expression microarray (Design ID: 023710, Agilent Technologies)were used to characterise gene expression profiles of Daphnia magna neoantes exposed to silver nanoparticles ( AgNPs ) or silver nitrate ( AgNO3 ) for 24 hours.
ORGANISM(S): Daphnia magna 
2016-04-01 | E-MTAB-4041 | biostudies-arrayexpress
TranscriptomicsDifferential Gene Expression in Daphnia magna Suggests Distinct Modes of Action and Bioavailability for ZnO nanoparticles and Zn ions
Zinc Oxide nanoparticles (ZnO NPs) are being rapidly developed for use in consumer products, wastewater treatment and chemotherapy providing several possible routes for ZnO NP exposure to humans and aquatic organisms. Recent studies have shown that ZnO NPs undergo rapid dissolution to Zn+2, but the...
ORGANISM(S): Daphnia magna 
2010-12-31 | E-GEOD-22051 | biostudies-arrayexpress
TranscriptomicsmRNA-seq and AGO2-RIP-seq of JURKAT T-cell acute lymphoblastic leukemia cell line upon overexpression of hsa-miR-143-3p
The aim of this study was to investigate the effect of hsa-miR-143-3p on global gene expression in T-cell acute lymphoblastic leukemia (T-ALL) and to unravel its direct target genes. For this purpose we selected Jurkat T-ALL cell line characterized by low expression of this miRNA. The cells were tra...
ORGANISM(S): Homo sapiens 
2024-08-31 | E-MTAB-13462 | biostudies-arrayexpress
TranscriptomicsNickel and binary metal mixtures in Daphnia magna after 96h
The recent development of a custom cDNA microarray platform for one of thé standard organisms in aquatic toxicology, Daphnia magna, opened up new ways to mechanistic insights of toxicological responses. In this study, gene expression and (sub)organismal responses (Cellular Energy Allocation, growt...
ORGANISM(S): Daphnia magna 
2010-05-22 | E-GEOD-13866 | biostudies-arrayexpress
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