Mantle P P - OmicsDI

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Unknown (759)
Transcriptomics (534)
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Homo sapiens (252)
Mus musculus (193)
Rattus norvegicus (24)
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Drosophila melanogaster (8)
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Glycine max (3)
Sus scrofa (3)
Arabidopsis thaliana (3)
Pinctada maxima (3)
Caenorhabditis elegans (2)
Canis lupus familiaris (2)
Pinctada fucata (2)
Mercenaria mercenaria (1)
Corylus avellana (1)
Melopsittacus undulatus (1)
Ruditapes philippinarum (1)
Melampsora laricis-populina (1)
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Organisms

Homo sapiens (8)
Pinctada fucata (6)
Mizuhopecten yessoensis (5)
Mus musculus (3)
Alasmidonta varicosa (1)
Pinctada margaritifera (1)
Pinctada maxima (1)
Unionidae (1)
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mollusc metagenome (1)

Repository

biostudies-arrayexpress (541)
ENA (36)
pride (14)
geo (11)
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iProX (4)
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Tissue

Mantle (6)
Gill (3)
B cell (2)
Blood (2)
Animal cell (1)
Blood cell (1)
Blood serum (1)
Cell suspension culture (1)
Exocrine glandular secretion (1)
Foot (1)
Gonad (1)
Lymph node (1)
Lymphoblast (1)
Mantle muscle (1)
Secretion (1)
Tentacle (1)

Disease

Normal (2)
Lymphoma (2)
Mantle cell lymphoma (1)
Oral squamous cell carcinoma (1)
Mantle cell lymphoma (1)
Not applicable (1)
Low-stage neuroblastoma (1)
None (1)
Burkitt lymphoma (1)

Technology Type

Mass Spectrometry (14)
Mass spectrometry (8)
Shotgun proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Gel-based experiment (2)
Illumina HumanMethylation 450K (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 4000 (10)
Illumina NovaSeq 6000 (6)
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Illumina HiSeq 2500 (3)
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Liquid Chromatography MS - positive - reverse phase (2)
10x 3’ single-cell mRNA v3 kit (10x Genomics) (1)
AB 310 Genetic Analyzer (1)
G2500A Hewlett Packard (1)
ScanArray 5000 [PerkinElmer] (1)
Other (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)
Orbitrap Eclipse (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
LTQ FT Ultra (Thermo Scientific) (1)
Liquid Chromatography MS - negative - direct infusion (1)
Liquid Chromatography MS - positive - direct infusion (1)
Gas Chromatography MS - positive (1)
Bruker (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)

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2013 (72)
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2011 (69)
2014 (57)
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2007 (13)
2022 (12)
2025 (10)
2023 (10)
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2017 (6)
2024 (5)
2006 (5)
2019 (4)
2020 (3)
2005 (3)
2021 (1)

CHEBI ID

CHEBI:17154 (4)
CHEBI:15671 (3)
CHEBI:17287 (3)
CHEBI:25017 (3)
CHEBI:30794 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:18183 (3)
CHEBI:18050 (3)
CHEBI:16857 (3)
CHEBI:17053 (3)
CHEBI:16414 (3)
CHEBI:27897 (3)
CHEBI:17191 (3)
CHEBI:17295 (3)
CHEBI:17351 (3)
CHEBI:16813 (3)
CHEBI:30769 (3)
CHEBI:16796 (2)
CHEBI:12936 (2)
CHEBI:16296 (2)
CHEBI:15672 (2)
CHEBI:89698 (2)
CHEBI:17023 (2)
CHEBI:70958 (2)
CHEBI:18305 (2)
CHEBI:17521 (2)
CHEBI:15688 (2)
CHEBI:29507 (2)

Metabolite Name

L-(+)-Tartaric acid (2)
L-Homocystine (2)
Pyruvic acid (2)
Lactulose (2)
D-Glucose (2)
Leucine (2)
Ketoleucine (2)
Glycine (2)
Phenylacetic acid (2)
Niacinamide (2)
Succinic acid (2)
Nonanoic acid (2)
Histamine (2)
L-Valine (2)
Tryptophan (2)
Talopyranose (1)
Pyridine, 1-oxide (1)
N-?-Acetyl-L-Lysine (1)
N-Ethyl-hexahydro-1H-azepine (1)
Myo-Inositol phosphate (1)
L-Proline, 5-oxo (1)
L-Methionine, trimethylsilyl ester (1)
L-Leucine, trimethylsilyl ester (1)
L-Isoleucine, trimethylsilyl ester (1)
L-Glutamine (1)
L-Aspartic acid (1)
L-Alanine (1)
L-(+)-Threose (1)
Hydroquinone O-beta-D-glucopyranoside (1)
Glycine, N-formyl- (1)

First Public Date

2014 (11)
2013 (5)
2024 (4)
2019 (3)
2015 (3)
2026 (2)
2020 (2)
2025 (1)
2023 (1)
2022 (1)
2021 (1)
2017 (1)
2016 (1)

Study type

Transcription profiling by array (413)
RNA-seq of coding RNA (38)
Comparative genomic hybridization by array (20)
ChIP-seq (13)
Transcription profiling by RT-PCR (8)
Methylation profiling by array (8)
RNA-seq of coding RNA from single cells (8)
Other (6)
Unknown experiment type (5)
ChIP-chip by array (5)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Plant - One-color microarray (1)
Human - One-color microarray (1)
Transcription profiling by tiling array (1)
ATAC-seq (1)
Hi-C (1)
RNA-seq of total RNA (1)

Release Date

2022 (95)
2013 (93)
2021 (92)
2010 (92)
2012 (88)
2023 (80)
2014 (79)
2011 (79)
2015 (78)
2025 (71)
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2024 (56)
2019 (55)
2018 (53)
2008 (41)
2017 (40)
2009 (24)
2007 (20)
2026 (13)
2006 (7)
2005 (3)
2004 (1)
2002 (1)
2000 (1)
1998 (1)

Lab affiliation

1) CNRS - ITAV USR3505, 31106 Toulouse, France 2) Nova Medical School, CEDOC- Chronic Diseases, 1150-082, Lisboa, Portugal (1)
Associate Professor Jan Strugnell Director, Centre for Sustainable Tropical Fisheries and Aquaculture, and Marine Biology and Aquaculture College of Science and Engineering, James Cook University, Townsville, 4811 QLD, Australia  (1)
CIIMAR / FCUP (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, Townsville, QLD, 4811, Australia (1)
Department of Biochemistry, Genetics and Immunology, University of Vigo, Spain (1)
Department of Chemical & Systems Biology Stanford University USA (1)
Department of Chemical & Systems Biology, Stanford University, USA (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Key Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China. (1)
Molecular and Cellular Biology Department, University of Guelph, Ontario, Canada (1)
National Reference Laboratory for Aquatic Animal Deseases, Ministry of Fisheries and Aquaculture, Federal University of Minas Gerais (1)
Tsinghua university (1)
Universidade de Vigo (1)

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Transcription profiling by array of human indolent mantle cell lymphoma

Mantle cell lymphoma (MCL) is an aggressive neoplasm with poor outcome. However, some patients have an indolent disease (iMCL) and may not require intensive treatment at initial diagnosis. Diagnostic criteria to recognize these patients are not available. We hypothesized that the analysis of the gen...

ORGANISM(S): Homo sapiens

2010-03-04 | E-GEOD-16455 | biostudies-arrayexpress

Transcription profiling and genotyping of 26 human mantle cell lymphoma samples

Among B-cell lymphomas mantle cell lymphoma (MCL) has the worst prognosis. By using a combination of genomic and expression profiling (Affymetrix GeneChip Mapping 10k Xba131 and U133 set), we analysed 26 MCL samples to identify genes relevant to MCL pathogenesis and that could represent new therapeu...

ORGANISM(S): Homo sapiens

2007-06-24 | E-GEOD-4176 | biostudies-arrayexpress

Differential expression analysis of genes from the mantle tissue of pearl oyster: Pinctada maxima

The mantle is a thin tissue from which proteins are secreted dictating the mollusk shell construction. As a conserved organ involved in shell formation throughout mollusks, the mantle is an excellent foundation from which to study biomineralization. A P. maxima mantle tissue specific cDNA microarray...

ORGANISM(S): Pinctada maxima

2010-05-15 | E-GEOD-14303 | biostudies-arrayexpress

The genes regulated by SOX11 in mantle cell lymphoma

The genes regulated by SOX11 in MCL was investigated in MCL cell line Granta 519 by siRNA knock down system. Cells were transfected using the LONZA electroporation system. Results represent cells harvested after 20 hours. Details of the experiment is published in PMID 21124928. Gene expression profi...

ORGANISM(S): Homo sapiens

2010-11-29 | E-GEOD-25621 | biostudies-arrayexpress

Phyllorhiza punctata proteome - oral arms, gonads, mantle

In this study, we characterize the proteomic landscape of the invasive, edible, and bloom-forming jellyfish Phyllorhiza punctata by analyzing its oral arms, gonads, and mantle tissues. Utilizing high-throughput liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS), we present a comp...

ORGANISM(S): Phyllorhiza punctata

2025-08-11 | PXD066818 | Pride

Genome-wide DNA Methylation Analysis Reveals Novel Targets for Drug Development in Mantle Cell Lymphoma

Mantle Cell Lymphoma (MCL) is a mostly incurable malignancy arising from naïve B cells (NBC) in the mantle zone of lymph node follicles. We analyzed genome-wide methylation in MCL patients using the HELP (Hpa II tiny fragment Enrichment by Ligation mediated PCR) assay and found significant aberrancy...

ORGANISM(S): Homo sapiens

2010-07-30 | E-GEOD-19243 | biostudies-arrayexpress

Transcription profiling of human mantle cell lymphoma cell lines with inhibition of the NMD pathway

Identification of potential tumor suppressor genes using the GINI strategy in Mantle Cell Lymphoma cell lines Experiment Overall Design: Inhibition of the NMD pathway was performed in Mantle Cell Lymphoma cell lines according to a modified protocol previously described (Noensie EN et al Nat Biotechn...

ORGANISM(S): Homo sapiens

2008-06-15 | E-GEOD-6728 | biostudies-arrayexpress

Mytilus galloprovincialis: temporal expression analysis of digestive gland and mantle

This SuperSeries is composed of the following subset Series: GSE22915: Mussel (Mytilus galloprovincialis) digestive gland tissue: gene expression profiles across an annual cycle GSE23049: Mytilus galloprovincialis: development of female gonads GSE23050: Mytilus galloprovincialis: development of male...

ORGANISM(S): Mytilus galloprovincialis

2011-07-11 | E-GEOD-23052 | biostudies-arrayexpress

Mantle Cell Lymphoma

Gene expression analyis of primary MCL including IGHV mutated and unmutated cases Gene set analysis was perfomed in MCL samples, comparing IGHV mutated cases vs. IGHV unmutated cases In total 38 MCL samples were processed with the HU133plus 2.0 microarray. Twenty four cases had a IGHV mutations and...

ORGANISM(S): Homo sapiens

2013-06-25 | E-GEOD-36000 | biostudies-arrayexpress

Tumor biopsies from 71 untreated patients with mantle cell lymphoma

The proliferation gene expression signature is a quantitative integrator of oncogenic events that predicts survival in mantle cell lymphoma Keywords: lymphochip; MCL; untreated Tumor biopsies from 71 untreated patients with mantle cell lymphoma

ORGANISM(S): Homo sapiens

2010-05-23 | E-GEOD-10793 | biostudies-arrayexpress

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