Martin Andrea A

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Unknown (83)
Genomics (63)
Proteomics (25)
Transcriptomics (19)
Metabolomics (3)
Models (1)

Organisms

Homo sapiens (87)
Mus musculus (5)
Escherichia coli (4)
Rattus norvegicus (2)
Bos taurus (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Corynebacterium glutamicum (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Candidatus Methanoperedens nitratireducens (1)
Drosophila melanogaster (1)
Leishmania major (1)

Organisms

Pipistrellus kuhlii (2)

Repository

EGA (57)
biostudies-arrayexpress (23)
pride (19)
MassIVE (5)
MetaboLights (3)
ENA (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (8)
Epithelial cell (6)
Saliva (2)
B cell (1)
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Embryo (1)
Enterocyte (1)
Granulocyte (1)
Lung (1)
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Monocyte (1)
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T cell (1)

Disease

Cervix carcinoma (5)
Severe acute respiratory syndrome (2)
COVID-19 (1)
Mantle cell lymphoma (1)
Normal (1)
Leishmaniasis (1)
Pelger-Huet anomaly (1)

Technology Type

Mass Spectrometry (19)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Shotgun proteomics (6)
Illumina HiSeq 2000 (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
NextSeq 550, ILLUMINA (1)

Instrument Platform

Q Exactive (3)
IScan (2)
Orbitrap Fusion (2)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2024 (8)
2015 (6)
2020 (6)
2019 (4)
2013 (3)
2022 (3)
2017 (3)
2016 (3)
2023 (2)
2014 (2)
2012 (2)
2007 (2)
2026 (2)
2011 (1)
2010 (1)
2008 (1)
2018 (1)
2025 (1)
2021 (1)

CHEBI ID

CHEBI:18237 (3)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15887 (2)
CHEBI:15940 (2)
CHEBI:16010 (2)
CHEBI:16411 (2)
CHEBI:16449 (2)
CHEBI:16958 (2)
CHEBI:17234 (2)
CHEBI:18186 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:26271 (2)
CHEBI:27386 (2)
CHEBI:27570 (2)
CHEBI:27897 (2)
CHEBI:28300 (2)
CHEBI:30745 (2)
CHEBI:30769 (2)
CHEBI:30776 (2)
CHEBI:32389 (2)
CHEBI:68503 (2)
CHEBI:741548 (2)
CHEBI:91315 (2)
CHEBI:10072 (1)
CHEBI:111517 (1)
CHEBI:116314 (1)

Metabolite Name

Asparagine (2)
Aspartate (2)
Glutamate (2)
Glutamine (2)
(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPI (20:4) (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPI (18:2) (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenosine (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6) (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2) (1)

IsPrivate

False (1)

Submitter Keywords

COVID-19 (1)

First Public Date

2020 (2)

Modelling Approach

Population model (1)

Study type

Transcription profiling by array (12)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (2)
RNA-seq of coding RNA (2)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (14)
2023 (11)
2024 (10)
2022 (10)
2021 (10)
2015 (8)
2013 (6)
2014 (5)
2019 (5)
2011 (4)
2026 (4)
2018 (4)
2012 (3)
2020 (3)
2016 (3)
2010 (2)
2007 (2)
2008 (1)
2017 (1)

Lab affiliation

Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin Luther University Halle-Wittenberg Halle (Saale), Germany (3)
Department of Pharmaceutical Chemistry and BioanalyticsInstitute of Pharmacy Martin Luther University Halle-Wittenberg Wolfgang-Langenbeck-St. 4 D-06120 Halle (Saale), Germany (2)
Martin-Luther University Halle-Wittenberg Institute of Pharmacy Department of Pharmaceutical Chemistry & Bioanalytics Charles Tanford Protein Center (2)
Blizard Institute, Centre for Genomics and Child Health, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, E1 2AT, UK (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Department of Food Chemistry and Toxicology, Institute of Applied Biosciences, Karlsruhe Institute of Technolog (KIT), Karlsruhe, Germany (1)
Department of Pharmaceutical Chemistry & Bioanalytics Center for Structural Mass Spectrometry Institute of Pharmacy Martin Luther University Halle-Wittenberg Kurt-Mothes-Str. 3, Entrance C D-06120 Halle/Saale (1)
Department of Pharmaceutical Chemistry & Bioanalytics AG Sinz Institute of Pharmacy, Center for Structural Mass Spectrometry Martin Luther University Halle-Wittenberg Germany (1)
Department of Pharmaceutical Chemistry & Bioanalytics Institute of Pharmacy Martin-Luther University Halle-Wittenberg Germany (1)
Department of Pharmaceutical Chemistry & Bioanalytics, Institute of Pharmacy, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3a, D-06120 Halle (Saale), Germany (1)
Department of Pharmaceutical Chemistry and Bioanalytics Center for Structural Mass Spectrometry Institute of Pharmacy Martin Luther University Halle-Wittenberg (1)
Department of Pharmaceutical Chemistry and Bioanalytics, Center for Structural Mass Spectrometry, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg (1)
Department of Pharmaceutical Chemistry and Bioanalytics, Institute of Pharmacy, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle/Saale D-01620, Germany Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle/Saale D-01620, Germany (1)
Infectious Diseases and Immunity in Global Health, McGill University, Montreal, Canada Department of Medicine, McGill University, Montreal, Canada (1)
Martin-Luther-University Halle-Wittenberg (MLU) Institute of Pharmacy Department of Pharmaceutical Chemistry and Bioanalyitics (1)

Tags

xref:PubMed:32699395 (1)

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Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach

The human gut microbiome establishes and matures during infancy, and dysregulation at this stage may lead to pathologies later in life. We conducted a multi-omics study comprising three generations of family members to investigate the early development of the gut microbiota. Fecal samples from 20...

2024-03-07 | MTBLS7670 | MetaboLights

AspSnFR: A Genetically-Encoded Biosensor for Real-Time Monitoring of Aspartate in Live Cells

Aspartate is crucial for nucleotide synthesis, ammonia detoxification and maintaining redox balance via the malate-aspartate-shuttle (MAS). To disentangle these multiple roles of aspartate metabolism, tools are required that measure aspartate concentrations in real time and in live cells. We intr...

2024-08-27 | MTBLS10035 | MetaboLights

The structure and statistics of language jointly shape cross-frequency neural dynamics during spoken language comprehension.

Not available

S-EPMC11471778 | biostudies-literature

Community Health Worker Asthma Interventions for Children: Results From a Clinically Integrated Randomized Comparative Effectiveness Trial (2016‒2019).

Not available

S-EPMC8355214 | biostudies-literature

Combining Affinity Enrichment, Cross-Linking with Photo-Amino Acids, and Mass Spectrometry for Probing Protein Kinase D2 Interactions

We present an approach that relies on the affinity enrichment of a target protein from a complex mixture, followed by a UV-induced activation of incorporated diazirine photo-reactive amino acids (photo-methionine and photo-leucine) and a covalent fixation of interaction partners. The captured protei...

ORGANISM(S): Homo sapiens (Human)

2017-04-10 | PXD005349 | Pride

Proteome analysis of subcellular fractions of HeLa cells

We investigated the interaction network of human PKD2 in the cytosol as well as in Golgi-enriched subcellular protein fractions, using an affinity enrichment strategy combined with chemical cross-linking/mass spectrometry (MS). Analysis of the subproteomes revealed the presence of distinct proteins ...

ORGANISM(S): Homo sapiens (Human)

2016-09-27 | PXD003917 | Pride

Human Hela cells Subcellular fractionation Proteome analysis Orbitrap fusion

Identification of human PKD2 interaction partners from cytosolic protein fractions of HeLa cells by affinity enrichment cross-linking/MS

ORGANISM(S): Homo sapiens (Human)

2016-09-27 | PXD003909 | Pride

Human Pkd2 Cross-linking/ms Affinity enrichment Orbitrap fusion

Identification of human PKD2 interaction partners from Golgi-enriched protein fractions of HeLa cells by affinity enrichment cross-linking/MS

ORGANISM(S): Homo sapiens (Human)

2016-09-27 | PXD003913 | Pride

Human Pkd2 Hela cells Cross-linking/ms Affinity enrichment Golgi apparatus Orbitrap fusion

Structural Analysis of 70S Ribosomes by Cross-Linking/Mass Spectrometry Reveals Conformational Plasticity

We analyzed 143 E. coli ribosomal structures, mapping a total of 10,771 intramolecular distances for 126 cross-link-pairs and 3,405 intermolecular distances for 97 protein pairs. Our study might serve as benchmark for conducting biochemical experiments on newly modeled protein regions, guided by XL-...

ORGANISM(S): Escherichia coli

2020-08-13 | PXD018935 | Pride

Ribosome cross-linking mass spectrometry

Incorporation of photo-amino acids in HeLa cells

In order to assess the efficiency of photo-labeling, total HeLa cell lysates treated with photo-amino acids were subjected to proteome analysis.

ORGANISM(S): Homo sapiens (Human)

2017-04-10 | PXD005346 | Pride

Hela cells Incorporation Photo-methionine Photo-leucine Orbitrap fusion

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