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OtherMembrane protein shaving with thermolysin can be used to evaluate topology predictors
Data from PASSEL: [[https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?datasetPassword=YV8455s&identifier=PASS00193 PASS00193]]. Data file: 110512_MB_LepB_65_10.mzXML. Published as part of Proteomics. 2013 Mar 20 . From the Abstract: {{i}}... Here, we examine the ability of some shavin...
ORGANISM(S): Escherichia_coli_k_12_substr__mg1655, Enterobacteria_phage_13a, Enterobacteria_phage_933w, Enterobacteria_phage_alpha3, Enterobacteria_phage_ba14, Enterobacteria_phage_bp_4795, Enterobacteria_phage_bz13, Enterobacteria_phage_cdti, Enterobacteria_phage_ecods1, Enterobacteria_phage_eps7, Enterobacteria_phage_epsilon15, Enterobacteria_phage_es18, Enterobacteria_phage_felix_01, Enterobacteria_phage_fels_2, Enterobacteria_phage_fi_sensu_lato, Enterobacteria_phage_g4_sensu_lato, Enterobacteria_phage_hk022, Enterobacteria_phage_hk620, Enterobacteria_phage_hk97, Enterobacteria_phage_i2_2, Enterobacteria_phage_id18_sensu_lato, Enterobacteria_phage_id2, Enterobacteria_phage_if1, Enterobacteria_phage_ike, Enterobacteria_phage_jk06, Enterobacteria_phage_js10, Enterobacteria_phage_js98, Enterobacteria_phage_jse, Enterobacteria_phage_k1e, Enterobacteria_phage_k1f, Enterobacteria_phage_k1_5, Enterobacteria_phage_lambda, Enterobacteria_phage_m13, Enterobacteria_phage_min27, Enterobacteria_phage_ms2, Enterobacteria_phage_mu, Enterobacteria_phage_n15, Enterobacteria_phage_n4, Enterobacteria_phage_p1, Enterobacteria_phage_p2, Enterobacteria_phage_p22, Enterobacteria_phage_p4, Enterobacteria_phage_phi1, Enterobacteria_phage_phieco32, Enterobacteria_phage_phiecom_gj1, Enterobacteria_phage_phip27, Enterobacteria_phage_phiv10, Enterobacteria_phage_phix174_sensu_lato, Enterobacteria_phage_prd1, Enterobacteria_phage_psp3, Enterobacteria_phage_rb14, Enterobacteria_phage_rb32, Enterobacteria_phage_rb43, Enterobacteria_phage_rb49, Enterobacteria_phage_rb51, Enterobacteria_phage_rb69, Enterobacteria_phage_rtp, Enterobacteria_phage_sf6, Enterobacteria_phage_sfv, Enterobacteria_phage_sp6, Enterobacteria_phage_ssl_2009a, Enterobacteria_phage_st104, Enterobacteria_phage_st64t, Enterobacteria_phage_st_1, Enterobacteria_phage_t1, Enterobacteria_phage_t3, Enterobacteria_phage_t4, Enterobacteria_phage_t5, Enterobacteria_phage_t7, Enterobacteria_phage_tls, Enterobacteria_phage_vt2_sakai, Enterobacteria_phage_wa13_sensu_lato, Enterobacteria_phage_wv8, Enterobacteria_phage_yyz_2008, Enterobacteriophage_qbeta 
GPM11210015438 | GPMDB
ProteomicsMass spectrometric analysis of membrane protein topology
Here we made an attempt to obtain partial structural information on the topology of multispan integral membrane proteins of yeast by isolating organellar membranes, removing peripheral membrane proteins at pH 11.5 and introducing chemical crosslinks between vicinal amino acids either using homo- or ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-10-11 | PXD006707 | Pride
Bs3 Plink Multispan proteins Edc Transmembrane domains 
UnknownComplete topology inversion can be part of normal membrane protein biogenesis.
Not available
S-EPMC5368078 | biostudies-literature
UnknownImportance of phosphorylation/dephosphorylation cycles on lipid-dependent modulation of membrane protein topology by posttranslational phosphorylation.
Not available
S-EPMC6901309 | biostudies-literature
UnknownDual-topology insertion of a dual-topology membrane protein.
Not available
S-EPMC4560821 | biostudies-literature
UnknownPrediction of membrane-protein topology from first principles.
Not available
S-EPMC2438223 | biostudies-literature
UnknownFRET-assisted determination of CLN3 membrane topology.
Not available
S-EPMC4106830 | biostudies-literature
UnknownRapid membrane protein topology prediction.
Not available
S-EPMC3077071 | biostudies-literature
ProteomicsA network of chaperones prevents and detects failures in membrane protein lipid bilayer integration
A fundamental step in membrane protein biogenesis is their integration into the lipid bilayer with a defined topology. Despite this, it remains unclear how cells detect and handle failures in membrane integration. Our data show that single point mutations in the membrane protein connexin 32 (Cx32), ...
ORGANISM(S): Homo sapiens (Human) 
2019-01-29 | PXD009189 | Pride
Protein quality control Connexin Endoplasmic reticulum Topology Membrane protein Er membrane complex Chaperone Protein degradation Protein folding 
UnknownDynamic Lipid-dependent Modulation of Protein Topology by Post-translational Phosphorylation.
Not available
S-EPMC5290939 | biostudies-literature
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