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ProteomicspLink 2: A high-speed search engine with systematic evaluation for proteome-scale identification of cross-linked peptides
Crosslinking mass spectrometry (CXMS) is a powerful technique to study protein structures and interactions. However, software tools for CXMS data analysis suffer from poor speed and credibility, especially at a proteome scale. Here, we introduce pLink 2, a search engine with higher speed and credibi...
ORGANISM(S): Escherichia coli 
2019-07-26 | PXD012109 | Pride
E.coli Qehf 
UnknowncoPLINK: A complementary tool to PLINK.
Not available
S-EPMC7500662 | biostudies-literature
UnknownSecond-generation PLINK: rising to the challenge of larger and richer datasets.
Not available
S-EPMC4342193 | biostudies-literature
ProteomicsConfirmation of direct interaction between H3K56cr and GLYR1 by H3K*56cr Site-Link in living cells
As we have found that H3K56cr can crosslink with GLYR1 in living cells, we now perform H3K*cr Site-Link in GLYR1 overexpressed cells. The subsequent 365-nm light irradiation could activate the diazirine and covalently capture potential effector proteins on native chromatin in living cells. The cross...
ORGANISM(S): Homo sapiens (Human) 
2023-03-06 | PXD033960 | Pride
Plink Glyr1 H3k56cr 
UnknownPLINK: a tool set for whole-genome association and population-based linkage analyses.
Not available
S-EPMC1950838 | biostudies-literature
UnknownA high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides.
Not available
S-EPMC6667459 | biostudies-literature
UnknownCanary: an automated tool for the conversion of MaCH imputed dosage files to PLINK files.
Not available
S-EPMC9327220 | biostudies-literature
UnknownHow to study runs of homozygosity using PLINK? A guide for analyzing medium density SNP data in livestock and pet species.
Not available
S-EPMC6990544 | biostudies-literature
TranscriptomicsGenomic variation in Mozambique and Angola: Contribution to the Bantu Expansion
We seek to investigate the genetic relationships between different Bantu-speaking populations and the migratory routes they followed during various phases of the Bantu expansion. Genomic and whole genome amplified DNA were genotyped on the Illumina InfiniumOmni2.5Exome-8v1.3 array. For quality contr...
ORGANISM(S): Homo sapiens 
2019-11-24 | E-MTAB-8450 | biostudies-arrayexpress
TranscriptomicsNCI60 Affy500K Profiling
Comparison between cell lines from 9 different cancer tissue of origin types (Breast, Central Nervous System, Colon, Leukemia, Melanoma, Non-Small Cell Lung, Ovarian, Prostate, Renal) from NCI-60 panel Runs of homozygosity analysis was done for 63 cell lines by both dChip basic-HMM method and PLINK ...
ORGANISM(S): Homo sapiens 
2012-02-01 | E-GEOD-32264 | biostudies-arrayexpress
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