Modifications - OmicsDI

Show results for

Unknown (40124)
Proteomics (26126)
Genomics (13288)
Transcriptomics (6065)
Metabolomics (3690)
Other (980)
Methylation profiling (542)
Models (84)
Multiomics (31)
Clinical (22)
Genomic (15)

Organisms

Homo sapiens (4533)
Mus musculus (3501)
Drosophila melanogaster (911)
Arabidopsis thaliana (572)
Caenorhabditis elegans (480)
Saccharomyces cerevisiae (339)
Rattus norvegicus (211)
Danio rerio (109)
Schizosaccharomyces pombe (94)
Escherichia coli (88)
Bos taurus (83)
Oryza sativa (70)
Zea mays (50)
Gallus gallus (48)
Plasmodium falciparum (44)
Sus scrofa (42)
cellular organisms (30)
Glycine max (30)
Vitis vinifera (26)
Escherichia coli str. K-12 substr. MG1655 (21)
Pan troglodytes (19)
Viridiplantae (13)
Bacillus subtilis (10)
Solea senegalensis (10)
Mammalia (7)
Cavia porcellus (5)
Trypanosoma brucei (4)
Eukaryota (3)
Rhodotorula toruloides (2)
Rodentia (1)

Organisms

Homo sapiens (2883)
Mus musculus (2512)
Arabidopsis thaliana (285)
Drosophila melanogaster (172)
Saccharomyces cerevisiae (152)
Rattus norvegicus (111)
Caenorhabditis elegans (82)
Danio rerio (63)
Oryza sativa (50)
Schizosaccharomyces pombe (47)
Bos taurus (47)
Escherichia coli (29)
Sus scrofa (28)
Gallus gallus (28)
Plasmodium falciparum (26)
Xenopus laevis (23)
Zea mays (19)
Solanum lycopersicum (17)
synthetic construct (17)
Caldicellulosiruptor bescii (14)
Neurospora crassa (11)
Triticum aestivum (11)
Glycine max (11)
Vitis vinifera (11)
Oryza sativa Japonica Group (10)
Bombyx mori (9)
Xenopus tropicalis (8)
Medicago truncatula (8)
Macaca mulatta (8)
Oryzias latipes (8)

Repository

pride (21654)
ENA (9299)
geo (6660)
biostudies-arrayexpress (4460)
MassIVE (4080)
GNPS (3483)
iProX (298)
MetaboLights (201)
PeptideAtlas (197)
jPOST (167)
EGA (107)
BioModels (80)
PanoramaPublic (40)
GPMDB (20)
dbGaP (15)
PAXDB (13)
NODE (11)
LINCS (9)
Cell Collective (4)
ExpressionAtlas (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (4564)
Epithelial cell (1318)
Brain (1242)
Permanent cell line cell (725)
Liver (666)
Blood (531)
Plant cell (529)
Blood plasma (518)
Breast (73)
Others (69)
Plasma Non-glyco (11)
Male Reproductive System (8)
Digestive System (8)
Female Reproductive System (7)
Large Intestine (6)
Mixture (5)
Solvent (4)
Cell line (3)
Spleen (3)
Liver (3)
Leaf (2)
Root (2)
Brain (2)
Urine (1)
Colorectum (1)
Prostate (1)
Lung (1)
Pancreas (1)
Adrenal Gland (1)
Kidney (1)

Disease

Colon cancer (317)
Malaria (43)
Chronic myeloid leukemia (33)
Prostate cancer (33)
Colorectal cancer (31)
Cancer (14)
Normal (13)
Diabetes mellitus (12)
Renal cell carcinoma (12)
Head and neck squamous cell carcinoma (10)
Infiltrating ductal carcinoma (2)
Amyloidosis (1)
Tumor bearing (1)
Toxicity (1)
4T1 tumor-bearing (1)
Primary medulloblastoma (1)
Phyllodes tumor (1)
Burkitt's lymphoma (1)
Pseudorabies virus infected (1)
Mild hyperglycemia, liver dysfunction, and renal glycosuria (1)
Spinal muscular atrophy (1)
AIDS-KS, HIV+, nodular (late) stage (1)
Teratozoospermia and infertility (1)
Untreated prostate cancer (1)
Mock infected (1)
Osteosarcoma (1)
These mice have a relatively normal first wave of spermatogenesis but never become fertile. Older animals show increased apoptosis of germ cells, increasing in severity as germ cell stage advances. (1)
Chronic myelogenous leukemia (1)
Reference (1)
Chicken Anaemia Virus infected (1)

Technology Type

Mass Spectrometry (21655)
Shotgun proteomics (11734)
Bottom-up proteomics (4481)
Data-dependent acquisition (2611)
Affinity purification coupled with mass spectrometry proteomics (2596)
Gel-based experiment (1459)
Data-independent acquisition (1187)
Top-down proteomics (678)
SWATH MS (474)
Chemical cross-linking coupled with mass spectrometry proteomics (433)
SRM/MRM (211)
Mass spectrometry (160)
All-ion fragmentation (112)
Mass spectrometry assay (35)
GCP (9)
Mass spectrometry (9)
NMR spectroscopy (6)
Illumina HiSeq 2000 (5)
NMR spectroscopy assay (2)
NextSeq 500, ILLUMINA, Illumina HiSeq 2500 (1)
Affymetrix Axiom Genome-Wide ASI 1 Array (1)
Illumina HumanMethylation 450K (1)
Illumina 450k (1)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing (1)
Illumina HumanOmniExpress-12 v1., Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina Genome Analyzer IIx (1)
Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (90)
NextSeq 500 (88)
Illumina HiSeq 2500 (83)
Illumina HiSeq 2000 (82)
Illumina HiSeq 4000 (38)
NextSeq 550 (33)
Illumina MiSeq (29)
HiSeq X Ten (22)
NextSeq 2000 (19)
Illumina NovaSeq X (16)
Illumina Genome Analyzer II (14)
Illumina Genome Analyzer IIx (13)
Scanning hardware (13)
Illumina HiSeq 1500 (10)
GenePix 4000B [Axon Instruments] (5)
DNBSEQ-G400 (5)
Illumina HiSeq 1000 (5)
N/A (5)
Conviron controlled environment chamber (4)
AB SOLiD 4 System (4)
GenePix Professional 4200A [Axon Instruments] (4)
GenePix 4000A [Axon Instruments] (4)
MinION (4)
Element AVITI (3)
PromethION (3)
Axon- GenePix4000B (3)
G2565BA DNA microarray scanner [Agilent] (3)
RNAtag-Seq protocol (Shishkin et al., 2015) (2)
Sequel II (2)
AB SOLiD 5500 (2)

Publication Date

2025 (5199)
2024 (4405)
2022 (4125)
2023 (4057)
2026 (3571)
2021 (3317)
2020 (2572)
2019 (2158)
2018 (1907)
2017 (1396)
2015 (1374)
2016 (1304)
2013 (1284)
2014 (1079)
2010 (817)
2011 (721)
2012 (620)
2009 (228)
2008 (204)
2007 (113)
2006 (68)
2005 (48)
2004 (11)
2003 (3)

UNIPROT ID/AC

Q6A4J8 (2)
P62878 (2)
Q923E4 (2)
P97769 (2)
Q76MZ3 (2)
Q9ESN9 (2)
Q9R0T8 (2)
Q91WG5 (2)
Q9WVC6 (2)
P31750 (2)
Q9R1E0 (2)
P01008 (2)
P12259 (2)
P00742 (2)
P00734 (2)
P25963 (2)
Q61501 (2)
P97377 (2)
Q07812 (2)
P10415 (2)
P28482 (2)
O75676 (1)
O75582 (1)
Q13547 (1)
Q9NYS0 (1)
Q9NNX6 (1)
Q9NQ31 (1)
Q9UQC1 (1)
Q8NB16 (1)
Q9Y572 (1)

ENSEMBL ID

ENSG00000170477 (171)
ENSG00000229353 (122)
ENSG00000147251 (120)
ENSG00000204131 (81)
ENSG00000247315 (81)
ENSG00000176092 (36)
ENSG00000003402 (1)
ENSG00000171791 (1)
ENST00000333681.5 (1)
ENSSSCT00065044848.1 (1)
ENST00000371199.8 (1)
ENST00000612899.5 (1)
ENSG00000101966 (1)
ENST00000216797.10 (1)
ENSG00000100906 (1)
ENSG00000118503 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141637 (1)
ENSMUSG00000021039 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:15428 (64)
CHEBI:17754 (56)
CHEBI:16643 (53)
CHEBI:16761 (52)
CHEBI:17992 (52)
CHEBI:17154 (52)
CHEBI:15422 (50)
CHEBI:16526 (44)
CHEBI:15379 (41)
CHEBI:16474 (41)
CHEBI:17363 (38)
CHEBI:16905 (37)
CHEBI:16108 (37)
CHEBI:4167 (36)
CHEBI:15414 (36)
CHEBI:16236 (36)
CHEBI:15343 (36)
CHEBI:16908 (36)
CHEBI:15927 (35)
CHEBI:17151 (35)
CHEBI:16870 (35)
CHEBI:16882 (35)
CHEBI:50622 (35)
CHEBI:29164 (35)
CHEBI:29161 (35)
CHEBI:29159 (35)
CHEBI:29163 (35)
CHEBI:29162 (35)
CHEBI:29154 (35)
CHEBI:29153 (35)

Metabolite Name

Taurine (21)
Hypoxanthine (18)
Uracil (17)
Citric acid (17)
Adenosine (17)
Adenine (17)
Uridine (17)
Cytosine (16)
Guanosine (16)
Inosine (16)
Creatinine (15)
Xanthine (14)
Creatine (14)
Xanthosine (13)
Uric acid (13)
Cytidine (13)
Betaine (12)
Guanine (12)
Alanine (12)
Phenylalanine (12)
Glutamine (12)
L-Phenylalanine (12)
Citric acid (11)
Ornithine (11)
Spermidine (11)
L-Tryptophan (11)
Tryptophan (11)
L-Methionine (11)
Leucine (10)
Succinic acid (10)

First Public Date

2025 (1203)
2024 (1062)
2026 (975)
2023 (906)
2014 (818)
2022 (674)
2021 (647)
2020 (636)
2019 (526)
2013 (451)
2018 (421)
2017 (416)
2015 (297)
2016 (261)
2012 (3)
2010 (2)
2011 (1)

Modelling Approach

Ordinary differential equation model (34)
Constraint-based model (7)
Other (2)
Differential equation model (2)
Petri net (1)

Study status

Completed (9)
Not provided (5)
Recruiting (4)
Enrolling by invitation (1)
Terminated (1)
Active, not recruiting (1)
Not yet recruiting (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (122)
EDyP (87)
Head of the Curie Institute Mass Spectrometry Platform (79)
Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (44)
University of Edinburgh (40)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (40)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (34)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (32)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (29)
IRCCS Istituto G Gaslini (28)
Head of Proteomics (28)
The Institute of Cancer Research (27)
Functional Proteomics, ICR (27)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (25)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (24)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (24)
Imperial College London (23)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (23)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (22)
Utrecht University (22)
European Molecular Biology Laboratory (21)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (21)
Wellcome Trust Sanger Institute (21)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (19)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (19)
Moffitt Cancer Center Tampa, FL, USA (19)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (18)
Harvard Medical School (18)
Institute of Molecular Biology (IMB), Mainz, Germany (18)

Keyword

Fecal Occult Blood Test (FOBT) (1)
Quality improvement cycles (1)
Screening, (1)
Community health education, (1)
Decision making, (1)
Computer-assisted decision making (1)
Retina (1)
OCT-angiography (1)
Anti-VEGF (1)
Microvascularization (1)
21+ years old (1)
Address (1)
Amputation (1)
Area (1)
Arm (1)
Atheroscleroses (1)
Atherosclerotic (1)
Bariatrics (1)
Behavior Conditioning Therapy (1)
Behavior Modification (1)
Behavior Therapy (1)
Behavior Treatment (1)
Behavior or Life Style Modifications (1)
Behavioral (1)
Behavioral Conditioning Therapy (1)
Behavioral Modification (1)
Behavioral Therapy (1)
Behavioral Treatment (1)
Beta Cell (1)
Blood Pressure, High (1)

IsPrivate

False (80)

Model Flag

Non Kinetic (38)

Submitter Keywords

FROG (4)
Immuno-oncology (1)

Classification

bacteria (84)
protozoa (53)
fungi (35)
viruses (24)
helminths (4)

Modification

N6 (59)
4x(15)N labeled L-arginine (55)
2x(15)N labeled L-lysine (50)
15.994915 (42)
4-tetrahydrothiazine-3-carboxylic acid (40)
N6-dimethyl-L-lysine (35)
57.021464 (31)
42.010565 (26)
Not available (24)
-17.026549 (21)
4x(2)H labeled dimethylated residue (11)
+3amu) (11)
45.029395 (10)
79.966331 (9)
-18.010565 (6)
6.020129 (5)
10.008269 (5)
58.005479 (5)
4x(2)H labeled dimethylated L-lysine (5)
4 (5)
0.984016 (4)
3x(2)H labeled N6-acetyl-L-lysine (4)
71.037114 (4)
6x(2)H labeled dimethylated L-arginine (4)
57.02146 (4)
15.99491 (4)
56.026215 (3)
27.994915 (2)
Heavy form - site K (2)
59.036279 (2)

Study type

Transcription profiling by array (1434)
ChIP-seq (938)
RNA-seq of coding RNA (537)
ChIP-chip by tiling array (482)
Methylation profiling by high throughput sequencing (151)
RNA-seq of non coding RNA (138)
Other (119)
Methylation profiling by array (101)
Comparative genomic hybridization by array (87)
ChIP-chip by array (75)
RNA-seq of coding RNA from single cells (36)
Unknown experiment type (33)
Genotyping by high throughput sequencing (32)
DNA-seq (28)
ATAC-seq (25)
RNA-seq of total RNA (25)
Transcription profiling by tiling array (24)
Cell line - High-throughput sequencing (20)
MicroRNA profiling by array (17)
CUT&RUN (17)
High-throughput sequencing (13)
RIP-seq (10)
Proteomic profiling by array (10)
Bisulfite-seq (9)
Animal - High-throughput sequencing (8)
CLIP-seq (8)
Hi-C (8)
MicroRNA profiling by high throughput sequencing (7)
Transcription profiling by SAGE (6)
Plant - High-throughput sequencing (6)

Release Date

2025 (4284)
2022 (4235)
2023 (4027)
2021 (3855)
2024 (3510)
2020 (3131)
2019 (2515)
2018 (2275)
2017 (2116)
2015 (2041)
2016 (2026)
2014 (2011)
2013 (1873)
2012 (1358)
2011 (1307)
2010 (1199)
2009 (668)
2026 (623)
2008 (558)
2007 (317)
2006 (223)
2005 (154)
2004 (82)
2003 (59)
2002 (39)
2001 (30)
1998 (18)
2000 (17)
1999 (17)
1997 (5)

Location

France (5)
United States (4)
North America (2)
Spain (2)
Netherlands (2)
United Kingdom (2)
Japan (2)
New Zealand (1)
Germany (1)
Israel (1)
Argentina (1)
Italy (1)
Hungary (1)
Australia (1)

Previous page
1 / 9095
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 9095
Next page

Sort by:

Relevance

Page size

Neuronal tRNA modifications in Aplysia californica are repatterned during behavioral habituation

Transfer RNA (tRNA) modifications have been increasingly implicated as post-transcriptional regulators of basic neuronal functions. However, characterizing tRNA modification profiles in specific neural circuits that control well-defined behaviors is notoriously difficult due to the complexity of con...

2026-09-01 | MTBLS15420 | MetaboLights

Identification of the modifications in artificial E. coli rRNAs

Ribosome biogenesis is pivotal in the self-replication of life. In Escherichia coli, three ribosomal RNAs and 54 ribosomal proteins are synthesized and subjected to cooperative hierarchical assembly facilitated by numerous accessory factors. Realizing ribosome biogenesis in vitro is a critical miles...

2024-12-09 | MTBLS7425 | MetaboLights

Multiomics analysis of residual feed intake regulation in calves by intestinal microbiota-mediated epigenetic modifications

Feed efficiency is a critical trait affecting the economic profitability and environmental sustainability of livestock production. Residual Feed Intake (RFI), as a key metric for feed efficiency, effectively reflects differences in energy utilization for maintenance and production. This study aims t...

2026-04-20 | MTBLS14315 | MetaboLights

Maternal gut microbiome, pregnancy exposure to environmental contaminants, and child health outcomes: A pilot study exploring potential effect modifications by diet

Not available

ORGANISM(S): Homo sapiens

ST001040 | MetabolomicsWorkbench

Posttranslational modification analysis of Histone H3t

Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice.

ORGANISM(S): Mus Musculus (mouse)

2024-09-13 | PXD052428 | JPOST Repository

Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans

Post-transcriptional chemical modification of RNA bases is a widespread and physiologically relevant regulator of RNA maturation, stability, and function. While modifications are best characterized in short, noncoding RNAs such as transfer RNAs (tRNAs), growing evidence indicates that messenger RNAs...

ORGANISM(S): Homo sapiens

2015-10-31 | E-GEOD-66224 | biostudies-arrayexpress

Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip.

A global view of PML-RAR? transcriptional functions was obtained by genome-wide binding and chromatin modification analyses, combined with genome wide expression data. Complete Abstract: The translocation t(15;17) generates the chimeric PML-RAR? transcription factor that is the initiating event of ...

ORGANISM(S): Homo sapiens

2008-09-06 | E-GEOD-12641 | biostudies-arrayexpress

Environmental Conditions Elicit a Slow but Enduring Response of Histone Post-Translational Modifications in Mozambique Tilapia

Histone post-translational modifications (PTMs) are epigenetic marks that operate within the central dogma of molecular biology: upon an environmental stimulus, the histone PTMs surrounding DNA can be changed in a way that modifies gene expression, and, therefore, the abundance and composition of RN...

ORGANISM(S): Oreochromis Mossambicus

2024-12-10 | PXD042718 | panorama

Data for: A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls

Histone proteomics from 5 human cell lines, discussed in publication: "A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls". Further explanation of data types, methods, and analysis are available in Data Explanation document in...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000084298 | MassIVE

Misactivation of multiple starvation responses in yeast by loss of tRNA modifications.

Not available

S-EPMC7367188 | biostudies-literature

Previous page
1 / 9095
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 9095
Next page

Sort by:

Relevance

Page size

90944 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

Keyword

IsPrivate

Model Flag

Submitter Keywords

Classification

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets