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MetabolomicsUnbiased LC-MS-based metabolomics analysis for both whole cell and mitochondria metabolites to gain an insight into the role of Tug1/PGC1 axis on metabolite profiles in podocytes
Not available
ORGANISM(S): Mus musculus 
ST001850 | MetabolomicsWorkbench
ProteomicsA Rapid and Sensitive Single-cell Proteomic Method Based on Fast LC Separation, Deep-learning RT Prediction and MS1-only Acquisition
We report an integrate strategy that combines fast liquid chromatography (LC) separation, deep learning-based retention time (RT) prediction and MS1-only acquisition for sensitive and rapid single-cell proteome analysis. Finally, SCP-MS1 was applied to sorafenib resistant HepG2 cells.
ORGANISM(S): Homo Sapiens 
2022-08-26 | PXD036211 |
ProteomicsComparative Evaluation of MaxQuant and Proteome Discoverer MS1-based Protein Quantification Tools
MS1-based label-free quantification can compare precursor ion peaks across runs, allowing reproducible protein measurements. Among bioinformatic platforms enabling MS1-based quantification, MaxQuant (MQ) is one of the most used, while Proteome Discoverer (PD) has recently introduced the Minora tool....
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2021-05-31 | PXD022169 | Pride
Dynamic range Proteomics Mass spectrometry Specificity Sensitivity Accuracy Precision Label-free quantification Differential analysis 
OtherMS1-Based Label-Free Proteomics Using a Quadrupole Orbitrap Mass Spectrometer.
Data from ProteomeXchange, PXD ID: PXD001385. File: QEP1_SpikeIn_230914_3_3ng_270914.mzml. Published as part of J Proteome Res. 2015 Mar 24 . From the Abstract: {{i}} Presented is a data set for benchmarking MS1-based label-free quantitative proteomics using a quadrupole orbitrap mass spectrometer....
ORGANISM(S): Homo_sapiens_viruses, Human_female, Escherichia_coli_k_12_substr__mg1655 
GPM32320014338 | GPMDB
Resource Reanalysis 
UnknownComparative Evaluation of MaxQuant and Proteome Discoverer MS1-Based Protein Quantification Tools.
Not available
S-EPMC8280745 | biostudies-literature
UnknownPower of mzRAPP-Based Performance Assessments in MS1-Based Nontargeted Feature Detection.
Not available
S-EPMC9218958 | biostudies-literature
UnknownFrom MS1 to Structure: A Van Krevelen-DBE-Aromaticity-Based Framework for Annotating Specialized Metabolites via High-Resolution Mass Spectrometry.
Not available
S-EPMC12454732 | biostudies-literature
UnknownA sulfatide-centered ultra-high-resolution magnetic resonance MALDI imaging benchmark dataset for MS1-based lipid annotation tools.
Not available
S-EPMC12766628 | biostudies-literature
ProteomicsAn ultra-high-resolution IonStar strategy enhancing accuracy and precision of MS1-based proteomics and an extensive comparison with state-of-the-art SWATH-MS in large-cohort quantification
Quantitative proteomics in large cohorts is highly valuable for biomedical/pharmaceutical investigations but often suffers from suboptimal reliability, accuracy, and reproducibility. Here we describe a new ultra-high-resolution (UHR) IonStar method achieving precise/reproducible protein measurement ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2021-06-24 | PXD017915 | Pride
Ultrahigh resolution ionstar 240k quantification 
ProteomicsAn ultra-high-resolution IonStar strategy enhancing accuracy and precision of MS1-based proteomics and an extensive comparison with state-of-the-art SWATH-MS in large-cohort quantification
Quantitative proteomics in large cohorts is highly valuable for biomedical/pharmaceutical investigations but often suffers from suboptimal reliability, accuracy, and reproducibility. Here we describe a new ultra-high-resolution (UHR) IonStar method achieving precise/reproducible protein measurement ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2021-06-24 | PXD017812 | Pride
Ultrahigh resolution ionstar Swath-ms 120k technical replicates 
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