Nef - OmicsDI

Show results for

Unknown (1024)
Transcriptomics (676)
Genomics (129)
Proteomics (51)
Other (3)
Metabolomics (1)

Organisms

Homo sapiens (255)
Mus musculus (145)
Saccharomyces cerevisiae (46)
Arabidopsis thaliana (37)
Rattus norvegicus (23)
Drosophila melanogaster (20)
Caenorhabditis elegans (17)
Macaca mulatta (15)
Bifidobacterium breve UCC2003 (13)
Daphnia magna (11)
Bacillus cereus ATCC 14579 (10)
Vibrio harveyi (8)
Pristionchus pacificus (8)
Bacillus subtilis (8)
Danio rerio (6)
Streptococcus suis (5)
Gallus gallus (5)
Enchytraeus albidus (4)
Penicillium chrysogenum (4)
Bacillus cereus (4)
Schizosaccharomyces pombe (4)
Bos taurus (4)
Moraxella catarrhalis BBH18 (3)
Tetrahymena thermophila (3)
Picea abies (3)
Lepidium sativum (3)
Glycine max (3)
Lactococcus lactis (2)
Aspergillus niger (2)
Leishmania major (2)

Organisms

Homo sapiens (29)
Macaca mulatta (9)
Mus musculus (7)
Heterocephalus glaber (2)
Chlorocebus sabaeus (1)
Human immunodeficiency virus 1 (1)

Repository

biostudies-arrayexpress (687)
ENA (67)
geo (42)
MassIVE (22)
pride (21)
EGA (14)
iProX (4)
PeptideAtlas (2)
ExpressionAtlas (1)
EVA (1)
jPOST (1)
MetaboLights (1)
PAXDB (1)

Tissue

T cell (7)
Cell culture (5)
HUVEC cell (3)
Others (2)
Endothelium (2)
Epithelial cell of cervix (2)
Blood (1)
Blood serum (1)
Carotid artery (1)
Heart (1)
Helper T cell (1)
JURKAT cell (1)
Liver (1)
Microglial cell (1)
Ovary (1)
T-lymphocyte (1)

Disease

Human immunodeficiency virus infectious disease (6)
Normal (5)
Ovarian tumor (2)
Benign nevi (1)
12 DAI with PepMV-EU isolate (1)
Giant cell glioblastoma (1)
Simian immunodeficiency virus (1)
ARR1-SRDX (1)
Locally advanced rectal cancer (1)
Temporal lobe epilepsy (1)
Cancer (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Neurofibromatosis type 1 (1)
Acute myeloid leukemia (1)
Aortic valve stenosis (1)
Heart septal defect (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (12)
Bottom-up proteomics (4)
Data-independent acquisition (4)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (15)
Illumina HiSeq 2500 (11)
NextSeq 500 (9)
Illumina HiSeq 2000 (8)
Illumina HiSeq 4000 (8)
BAS-5000 [FUJIFILM] (3)
Element AVITI (2)
Generation III Scanner (2)
Illumina Genome Analyzer II (2)
Scanning hardware (2)
Illumina MiSeq (2)
Illumina HiSeq 3000 (2)
Advanced Sequencing Facility (1)
Epidermal cells : Trypsin dissociation / Dermal cells :MACS Whole Skin Dissociation Kit (1)
Bio-Rad CFX96 Real-time System (1)
BD LSRFortessa (1)
10X Chromium Controller (1)
FACS (1)
Agilent G2565BA scanner (1)
Agilent Hybridization Oven (1)
Affymetrix 428 (1)
AB SOLiD 4 System (1)
BAS-1800 [FUJIFILM] (1)
ScanArray Lite [PerkinElmer] (1)
ScanArray 5000 [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Chemostat (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)

Publication Date

2010 (90)
2013 (88)
2012 (87)
2014 (69)
2015 (65)
2011 (62)
2008 (54)
2009 (38)
2007 (33)
2016 (31)
2026 (24)
2022 (18)
2020 (16)
2021 (14)
2024 (13)
2023 (13)
2025 (11)
2018 (11)
2019 (10)
2017 (10)
2005 (8)
2006 (7)
2004 (4)
2003 (3)

UNIPROT ID/AC

89462.XP_006039905.1 (1)
89462.XP_006039931.1 (1)
89462.XP_006040040.1 (1)
89462.XP_006040190.1 (1)
89462.XP_006040234.1 (1)
89462.XP_006040835.1 (1)
89462.XP_006041112.1 (1)
89462.XP_006041162.1 (1)
89462.XP_006041532.1 (1)
89462.XP_006041551.1 (1)
89462.XP_006041590.1 (1)
89462.XP_006041720.1 (1)
89462.XP_006041937.1 (1)
89462.XP_006041942.1 (1)
89462.XP_006042163.1 (1)
89462.XP_006042170.1 (1)
89462.XP_006042246.1 (1)
89462.XP_006042337.1 (1)
89462.XP_006042595.1 (1)
89462.XP_006042626.1 (1)
89462.XP_006042699.1 (1)
89462.XP_006042855.1 (1)
89462.XP_006042907.1 (1)
89462.XP_006043002.1 (1)
89462.XP_006043089.1 (1)
89462.XP_006043189.1 (1)
89462.XP_006043252.1 (1)
89462.XP_006043256.1 (1)
89462.XP_006043264.1 (1)
89462.XP_006043557.1 (1)

First Public Date

2026 (11)
2014 (11)
2025 (10)
2024 (6)
2023 (6)
2022 (6)
2018 (4)
2020 (3)
2019 (2)
2017 (2)
2016 (2)
2015 (2)
2021 (1)
2013 (1)

Classification

viruses (1)

Study type

Transcription profiling by array (428)
RNA-seq of coding RNA (41)
Comparative genomic hybridization by array (39)
ChIP-seq (30)
Unknown experiment type (22)
ChIP-chip by tiling array (17)
Other (16)
ChIP-chip by array (14)
RNA-seq of coding RNA from single cells (12)
DNA-seq (10)
RNA-seq of non coding RNA (8)
Methylation profiling by array (5)
Methylation profiling by high throughput sequencing (4)
Animal - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
Genotyping by array (3)
CLIP-seq (3)
RIP-seq (3)
CUT&RUN (3)
Transcription profiling by SAGE (2)
Transcription profiling by RT-PCR (2)
4C (2)
ATAC-seq (2)
Cell line - Single-cell sequencing (1)
MNase-seq (1)
Human - Two-color microarray (1)
RIP-chip by array (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2013 (130)
2012 (130)
2010 (126)
2015 (123)
2014 (122)
2011 (100)
2020 (83)
2008 (79)
2016 (78)
2022 (73)
2021 (72)
2023 (69)
2019 (69)
2025 (68)
2009 (66)
2018 (63)
2007 (51)
2024 (46)
2017 (45)
2006 (25)
2005 (18)
2026 (15)
2004 (12)
2003 (11)
2002 (9)
1998 (9)
2001 (6)
2000 (6)
1999 (5)
1997 (2)

Lab affiliation

Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (5)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
Centro de Pesquisa em Virologia (CPV) and Departamento de Biologia Celular e Molecular, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil (1)
Department of Biochemistry and Molecular Biology, Lipoproteins and Atherosclerosis Monash University, Australia Baker Heart and Diabetes Institute, Australia (1)
Department of Cellular and Molecular Pathology, UCSF, San Francisco, CA (1)
Department of Cellular and Molecular Pharmacology (1)
Department of Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0XY, UK (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Icahn School of Medicine at Mount Sinai (1)
Institute for Quantitative and Computational Biosciences (QCBio), University of California, Los Angeles, USA Department of Microbiology, Immunology, and Molecular Genetics (MIMG), University of California, Los Angeles, LA, USA Molecular Biology Institute, University of California, Los Angeles, USA (1)
National Heart and Lung Institute, Imperial College London, London, UK (1)
Protein Homeostasis Laboratory, Department of Life Sciences, School of Natural Sciences, Shiv Nadar Institution of Eminence, Delhi-NCR, Greater Noida, Gautam Buddha Nagar, Uttar Pradesh 201314, India. (1)
The Francis Crick Institute London, UK (1)
University of California San Francisco (1)
University of Cambridge (1)
cnic (1)

Previous page
1 / 189
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 189
Next page

Sort by:

Relevance

Page size

HIV-1 Nef changes the proteome of T cells extracellular vesicles

Extracellular vesicles (EVs) are biomolecule carriers for intercellular communication in health and disease. Nef is a human immunodeficiency virus (HIV) virulence factor that is released from cells within EVs and is present in plasma EVs of HIV-1 infected individuals. We performed a quantitative pro...

ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human)

2024-01-26 | PXD041028 | Pride

Transcription profiling of Jurkat CF4+ T cells transfected with simian immunodeficiency virus Nef cells leads to a molecular profile of viral persistence and immune evasion.

Jurkat T cell line was transfected with SIV Nef controlled by an inducible promoter system. Nef was induced by addition of 10 micromolar pronasterone A and gene expression values were determined after 24 hrs. Control Jurkat cells were untransfected and treated with 10 micromolar pronasterone A and g...

ORGANISM(S): Homo sapiens

2007-10-26 | E-GEOD-4785 | biostudies-arrayexpress

Transcription profiling by array of human CD4+ T-lymphocytes infected with VSVG-pseudotyped HIV-1 viruses lacking Env, Vpr, and Nef

The high mutation rate of HIV is linked to the generation of viruses expressing proteins with altered function whose impact on disease progression is unknown. We investigated the effects of HIV-1 viruses lacking Env, Vpr and Nef on CD4+ T cell gene expression using high-density DNA microarray analys...

ORGANISM(S): Homo sapiens

2008-10-26 | E-GEOD-12963 | biostudies-arrayexpress

Nef transfection of Jurkat T cells

Jurkat T cell line was transfected with SIV Nef controlled by an unducible promoter system. Nef was induced by addition of 10 micromolar pronasterone A and gene expression values were determined after 24 hrs. Control Jurkat cells were untransfected and treated with 10 micromolar pronasterone A and g...

ORGANISM(S): Homo sapiens

2006-07-25 | GSE4785 | GEO

Serge Nef

we performed the analysis of SOX9-GFP+ cells purified from mouse embryonic testis at embryonic day E17.5 and Postnatal day 5 and analyzed the effect of the deletion of the Insulin receptor (InsR) and Igf1 receptor (Igf1R) by comparing double mutant and control SOX9+ Sertoli cells

ORGANISM(S): Mus musculus

2013-03-09 | E-MTAB-1192 | biostudies-arrayexpress

HIV Nef transfected HEK293T cell culture and HIV mock transfected HEK293T cell culture [mRNA]

PRJNA505883 | ENA

HIV Nef transfected HEK293T cell culture and HIV mock transfected HEK293T cell culture [miRNA]

PRJNA505884 | ENA

Role of Cofilin 1 pathway and actin dynamics in nuclear retinoid receptor function

We have investigated the role of actin dynamics and the effect of actin cytoskeleton modifying agents on retinoid receptor-mediated transactivation. Using Nef, an actin modifying HIV-1 protein, the role of LMK1/CFL1-mediated actin dynamics in receptor function was studied. The effect of Nef expressi...

ORGANISM(S): Homo sapiens

2011-08-25 | E-GEOD-31665 | biostudies-arrayexpress

NefCD4AP2 Complex Crosslinking with DSSO for Integrative Structure Determination

Objective: HIV-1 Nef suppresses immune surveillance mechanisms to promote viral pathogenesis. Cellular receptor CD4 is essential for HIV entry into host cells, though becomes problematic at later stages in the virus replication cycle. CD4 at the plasma membrane is targeted by Nef for endocytosis an...

ORGANISM(S): Homo sapiens (Human) Human immunodeficiency virus 1

2021-09-09 | PXD019338 | Pride

Xlms Dsso Cd4 Ap2 Hiv-1 nef

HIV Nef transfected HEK293T cell culture and HIV mock transfected HEK293T cell culture [miRNA]

Purpose: Comparison of RNA-sequencing datasets obtained from exosomes of Nef-transfected and Mock-transfected HEK293T cells Methods: Assessment of RNA content of exosomes produced by Nef-transfected HEK293T cells and and Mock-transfected HEK293T cells Results: Differences in a set of microRNAs Concl...

ORGANISM(S): Homo sapiens

2018-11-18 | GSE122656 | GEO

Previous page
1 / 189
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 189
Next page

Sort by:

Relevance

Page size

1888 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets