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UnknownAnalysis of severe hand trauma injury frequency during "Munich's Oktoberfest" within the last 9 years in comparison to years with absence due to the COVID-19 pandemic.
Not available
S-EPMC9815061 | biostudies-literature
ProteomicsData-driven rescoring meets identification transfer in multi-batch isobaric labeling experiments: the best of both worlds (ProSIMSIt)
Multi-batch isobaric labeling experiments are frequently applied for clinical and pharmaceutical studies of large sample cohorts. To tackle the critical issue of missing values in such studies, we introduce the ProSIMSIt pipeline. It combines the advantages of tandem mass spectrum clustering via SIM...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD057211 | Pride
Prediction Missing values Isobaric labelling Simsi-transfer Oktoberfest Maxquant 
UnknownFGF21, a liver hormone that inhibits alcohol intake in mice, increases in human circulation after acute alcohol ingestion and sustained binge drinking at Oktoberfest.
Not available
S-EPMC6001399 | biostudies-literature
UnknownProSIMSIt: The Best of Both Worlds in Data-Driven Rescoring and Identification Transfer.
Not available
S-EPMC11976853 | biostudies-literature
ProteomicsPSM rescoring boosts identification of trypsin, AspN, and GluC peptides on timsTOF
To investigate whether samples digested with trypsin, GluC, or AspN benefit from PSM rescoring, we rescored a timsTOF Pro dataset that was digested using different proteases. For detailed information on data acquisition, please refer to the original publication by Fossati et al. (PXD025671). In brie...
ORGANISM(S): Mycobacterium Tuberculosis (ncbitaxon:1773) Homo Sapiens (ncbitaxon:9606) 
2024-01-30 | MSV000093954 | MassIVE
UnknownMolecular Epidemiology of the HIV Epidemic in Three German Metropolitan Regions - Cologne/Bonn, Munich and Hannover, 1999-2016.
Not available
S-EPMC5931588 | biostudies-literature
UnknownComparative Analysis of Data-Driven Rescoring Platforms for Improved Peptide Identification in HeLa Digest Samples.
Not available
S-EPMC11962579 | biostudies-literature
ProteomicsPSM rescoring boosts immunopeptide identification on timsTOF compared to Orbitrap
To compare the rescoring performance on Orbitrap versus timsTOF data, we utilized a comparison dataset comprising both HLA-I and HLA-II peptides measured on an Orbitrap and on a timsTOF. For detailed information on data acquisition, please refer to the original publication by Gravel et al. (PXD03878...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-07-17 | MSV000092461 | MassIVE
ProteomicsIntegrating Alternative Fragmentation Techniques into Standard LC-MS Workflows Using a Single Deep Learning Model Enhances Proteome Coverage
We built and characterised a mass spectrometer capable of performing CID (both beam type and resonant type), UVPD, EID and ECD in an automated fashion during an LCMS type experiment. We exploited this ability to generate large datasets through multienzyme deep proteomics experiments for characterisa...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human) Escherichia coli 
2026-03-13 | PXD065289 | Pride
Ecd Eid Uvpd 
ProteomicsTMT expression proteomics of HAP1 cells acutely depleted of TADA1 (time course)
The SAGA transcriptional co-activator complex regulates gene expression through histone acetylation at promoters, mediated by its histone acetyl transferase, KAT2A. While its structure and function have been extensively investigated, how the stability of individual subunits of SAGA, including KAT2A,...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2026-03-16 | PXD065443 | Pride
Human Saga Acute degradation Tmt expression proteomics Hap1 Tada1 
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