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ProteomicsDiscovering new pneumococcal diagnostic tools protein-based
Thanks to surface digestion protocol above pneumococcal pediatric strains and in silico selection, we selected 94 pneumococcal proteins according to their surface-exposed domains and/or interactions with surface environment. Then, that proteins were cloned as recombinant form in Escherichia coli a...
ORGANISM(S): Streptococcus pneumoniae 
2015-07-27 | PXD001740 | Pride
Pneumococcal protien diagnostic 
ProteomicsQuantitative proteomic analysis by Liquid Chromatography-Mass Spectrometry/Mass Spectrometry of Paracoccus denitrificans PD1222 under denitrifying conditions
In this work, the denitrification process carried out by Paracoccus denitrificans PD1222 has been followed up by a quantitative proteomic analysis.
ORGANISM(S): Paracoccus denitrificans PD1222 
2018-06-14 | PXD006821 | Pride
Liquid-chromatography Proteomics Nitrous oxide reductase Mass-spectrometry Denitrification Nitrous oxide Nitrate reductase Nitrate Paracoccus 
ProteomicsPneumococcal surface tryptic digestion
Surface digestion of living pneumococcal cells grown in different media that attempt to simulate different infection models (for example, in culture media containing the soluble secreted fraction orignated by the growth of macrophages and epithelial cells)
ORGANISM(S): Streptococcus pneumoniae 
2022-02-15 | PXD008885 | Pride
Surface proteins Surfomic Vaccine Streptococcus pneumoniae Trypsin 
ProteomicsQuantitative proteome analysis of biological nitrogen fixation and phosphorous mobilization in Azotobacter chroococcum NCIMB 8003
Quantitative proteomic analysis of Azotobacter chroococcum NCIMB 8003 under diazotrophic and/or phosphorous mobilization conditions.
ORGANISM(S): Arachis hypogaea (Peanut) 
2025-10-06 | PXD034112 | Pride
Phosphorous mobilization Proteomics Azotobacter chroococcum Biological nitrogen fixation 
ProteomicsProteomic response of P. pseudoalcaligenes CECT 5344 to mercury in presence of cyanideProteomic response of P. pseudoalcaligenes CECT 5344 to mercury in presence of cyanide
Quantitative proteomic analysis of P. pseudoalcaligenes CECT 5344 in the presence of mercury with cyanide as nitrogen source
ORGANISM(S): Pseudomonas fluorescens WH6 
2023-10-24 | PXD038659 | Pride
Dia-pasef Mercury Bioremediation Quantitative proteomics 
ProteomicsEffect of pH on the proteome of Paracoccus denitrificans PD1222 under denitrifying conditions
The work is based on the quantitative proteomic analysis free of marking samples of the gram negative denitrification bacteria Paracoccus denitrificans grown at different pH.
ORGANISM(S): Paracoccus denitrificans PD1222 
2021-09-08 | PXD013138 | Pride
Denitrification Ph Paracoccus denitrificans Proteome 
ProteomicsRole of the DapA protein in iron homeostasis and the metabolism of cyanide in jewelery wastewaters
Quantitative free labeling proteomics to elucidate the role of the DapA protein in iron metabolism and the assimilation of cyanide in the bacterium Pseudomonas pseudoalcaligenes. Integration, validation and discussion of results using other non-proteomic techniques such as qRT-PCR and determination ...
ORGANISM(S): Pseudomonas pseudoalcaligenes CECT 5344 Bacteria 
2020-02-18 | PXD014027 | Pride
Pseudomonas pseudoalcaligenes cect5344 Cyanide metabolism Proteomics Iron homeostasis Dapa 
ProteomicsCyanoalanine in Pseudomonas pseudoalcaligenes CECT5344
Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 to compare the nitrogen metabolism when ammonium, beta-cyanoalanine and jewelry residue (with both free and metal-complexed cyanide) are used as sole nitrogen source
ORGANISM(S): Pseudomonas pseudoalcaligenes CECT 5344 
2022-02-17 | PXD026640 | Pride
Pseudomonas pseudoalcaligenes cect5344 Proteomics Cyanide Cyanoalanine Jewelry residue 
ProteomicsProteome of arsenite in P. pseudoalcaligenes CECT 5344
Quantitative proteomic analysis of P. pseudoalcaligenes CECT 5344 in the presence of arsenite (As(III)) with ammonium and cyanide as nitrogen sources
ORGANISM(S): Pseudomonas pseudoalcaligenes CECT 5344 Bacteria 
2023-05-10 | PXD033539 | Pride
Biorremediation Arsenite Quantitative proteomics Thf 
ProteomicsProteome of NtrY defective mutant in Paracoccus denitrificans PD1222
Quantitative proteomic analysis of Paracoccus denitrificans PD1222 wild type and NtrY defective mutant in denitrifying conditions (anaerobiosis, nitrate as nitrogen source)
ORGANISM(S): Paracoccus denitrificans PD1222 Bacteria 
2022-10-13 | PXD033855 | Pride
Denitrification Paracoccus denitrificans Proteomic Ntrxy system 
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