Orbi trap - OmicsDI

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Proteomics (39)
Unknown (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (37)
Alteromonadales (37)
Canis lupus familiaris (37)
Carya cathayensis (37)
Clostridioides difficile 630 (37)
Cyanophora paradoxa (37)
Ensifer adhaerens (37)
Enterococcus faecalis (37)
Globicatella sanguinis (37)
Halictus scabiosae (37)
Histomonas meleagridis (37)
Human immunodeficiency virus 1 (37)
Listeria monocytogenes (37)
Listeria monocytogenes EGD-e (37)
Methylohalobius crimeensis 10Ki (37)
Mus musculus (37)
Mycobacterium tuberculosis (37)
Ophrys garganica (37)
Ophrys sphegodes (37)
Pseudomonas aeruginosa SJTD-1 (37)
Pseudomonas putida KT2440 (37)
Pyrococcus furiosus (37)
Rattus norvegicus (37)
Rhizobium sp. Leaf68 (37)
Schizosaccharomyces pombe 927 (37)
Schizosaccharomyces pombe 972h- (37)
Sphingomonas sp. Leaf257 (37)
Staphylococcus aureus (37)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (37)
Vitis vinifera (37)

Repository

pride (37)
MassIVE (2)

Tissue

Cell culture (7)
Brain (3)
Leaf (3)
Epithelial cell (2)
Gluteal muscle (2)
Permanent cell line cell (2)
Photosynthetic cell (2)
Whole body (2)
Internode (1)
Jejunum (1)
Liver (1)
Lung (1)
Mesenchymal cell (1)
Plant cell (1)
Renal glomerulus (1)
Rosette (1)
Skeletal muscle (1)
Skeletal muscle fiber (1)
Skeletal muscle tissue (1)
Urine (1)

Disease

Breast cancer (2)
Adult respiratory distress syndrome (1)
Alzheimer's disease (1)
Disease free (1)
Lung cancer (1)
Myofibrillar myopathy (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (17)
Bottom-up proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (4)
Data-dependent acquisition (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Affinity proteomics (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

LTQ Orbitrap Elite (2)

Publication Date

2025 (8)
2022 (7)
2023 (6)
2021 (6)
2026 (3)
2024 (2)
2020 (2)
2019 (1)
2018 (1)
2016 (1)
2013 (1)
2012 (1)

Release Date

2022 (1)
2021 (1)

Lab affiliation

Associate Professor Department of Microbiology and Immunology The G.W. Hooper Research Foundation The University of California, at San Francisco 513 Parnassus Ave, HSW 1532, Box 0552 San Francisco, CA 94143 (1)
Associate Professor Pulmonary/Critical Care Department of Medicine University of Minnesota (1)
BioDiscovery Institute, Department of Biological Sciences, University of North Texas (1)
Biochemistry and Molecular Biology, Michigan State University (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Centre for Proteome Research, Biochemistry and Systems Biology Department, University of Liverpool (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
David O. Morgan PhD Professor, Department of Physiology Vice Dean for Research, School of Medicine University of California, San Francisco Genentech Hall Room N312B 600 16th Street San Francisco CA 94143 415-476-6695 (1)
Department of Biochemistry & Biophysics, Texas A&M University, College Station, Texas 77843 (1)
Department of Biochemistry & Molecular Biology Michigan State University (lab head) (1)
Department of Biochemistry & Molecular Biology, Michigan State University (1)
Department of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia (1)
Department of Biochemistry and Molecular Biology Uniformed Services University, Bethesda, MD United States of America (1)
Department of Biochemistry and Molecular Biology and the Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Biochemistry and System Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Department of Cellular and Molecular Medicine, School of Medicine, University of California San Diego, La Jolla, CA. (1)
Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. (1)
Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720 USA California Institute for Quantitative Biosciences, University of California at Berkeley, Berkeley, CA 94720 Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720 USA (1)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (1)
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Dept Biomedical Sciences, School of Medicine and Health Sciences, Institute of Neurosciences, Universitat de Barcelona, E-08036 Barcelona (1)
Dept. Oncology-Pathology, SciLifeLab, Karolinska Institutet, Sweden (1)
Equine Neuromuscular Diagnostic Laboratory; Mary Anne McPhail Equine Performance Center; Large Animal Clinical Sciences; Michigan State University College of Veterinary Medicine (1)
Hospital for Sick Children, Toronto, Ontario, Canada (1)
Innovative Genomics Institute, Room 212C 2151 Berkeley Way Berkeley CA 94720 (1)
Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Finland (1)
Mary Anne McPhail Dressage Chair in Equine Sports Medicine Department Large Animal Clinical Sciences College of Veterinary Medicine Michigan State University (1)
Michigan State University (1)
Plant & Soil Science Building 1066 Bogue St, Rm A494E East Lansing, MI 48824 Michigan State University, United States (1)
School of Natural Sciences, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, U.K. (1)

Modification

4'-dihydroxyphenylalanine (1)

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Plastoglobules BN-PAGE experiment (Arabidopsis PGs under unstress and high light conditions)

Proteome comparison of isolated plastoglobules (PGs) from Arabidopsis thaliana (Col-0 ecotype) under unstress (UNS) and high light (HL) stress conditions. For both conditions, PGs were isolated from three independent set of plants each (i.e. three for UNS and three for HL). PGs were isolated from th...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2021-04-13 | PXD019735 | Pride

Phenolic Fingerprinting and Bioactivity Profiling of Extracts and Isolated Compounds from Gypothamnium pinifolium Phil.

Not available

S-EPMC9774750 | biostudies-literature

How to Screen and Prevent Metabolic Syndrome in Patients of PCOS Early: Implications From Metabolomics.

Not available

S-EPMC8207510 | biostudies-literature

Profiling carbonylated proteins in heart and skeletal muscle mitochondria from trained and untrained mice

Understanding the relationship between physical exercise, reactive oxygen species and skeletal muscle modification is important in order to better identify the benefits or the damages that appropriate or inappropriate exercise can induce. Heart and skeletal muscles have a high density of mitochondri...

ORGANISM(S): Rattus norvegicus (Rat)

2022-02-24 | PXD003982 | Pride

Two dimensional gel electrophoresis Tandem mass spectrometry Carbonylation Orbi trap

Quantitative proteomics profiling of protein kinase A substrates - Jurkat clone E6.1

Here we evaluate and explore a peptide-centric antibody generated to selectively enrich peptides containing the cAMP-dependent protein kinase A (PKA) consensus motif. This targeted phospho-proteomic strategy is used to profile temporal quantitative changes of protein PKA substrates in Jurkat T-lymph...

ORGANISM(S): Homo sapiens (Human)

2013-07-25 | PXD000148 | Pride

Targeted approach Dimethyl lableing Immunoprecipiation Phosphoproteomics Lc-msms

Asian citrus psyllid proteomics: Shotgun MS/MS analysis of impact of plant host on insect proteome + DIGE analysis of impact of plant host on insect proteome

The Asian citrus psyllid (Diaphorina citri) is a pest of citrus and the primary insect vector of the bacterial pathogen, ‘Candidatus Liberibacter asiaticus’ (CLas), which is associated with citrus greening disease. Variability in CLas titer in insects collected from infected plants has been attribut...

ORGANISM(S): Diaphorina citri (Asian citrus psyllid)

2022-04-27 | PXD011401 | Pride

Asian citrus psyllid Citrus greening Diaphorina citri Insect vector Candidatus liberibacter asiaticus Huanglongbing

Elucidating the Cellular Machinery for Lipid Storage in Plants

The overarching goal of this project is to understand the underlying mechanism for packaging storage lipids into lipid droplets in plant cells. Our group has identified several proteins involved in plant lipid droplet formation, but the inventory of proteins participating in this cellular process is...

ORGANISM(S): Nicotiana benthamiana

2022-02-16 | PXD023043 | Pride

Lipid droplet Neutral lipids Seipin Endoplasmic reticulum Ldip

Human urinary extracellular vesicles protein LC-MS/MS

Urinary extracellular vesicles (uEV) are a precious new source of biomarkers reflecting the physiological state of the upstream parent cells and organ systems. However, urinary Tamm-Horsfall Protein (THP; uromodulin) interferes heavily with all vesicle isolation attempts, precipitates with normal ur...

ORGANISM(S): Homo sapiens (Human)

2019-09-30 | PXD013429 | Pride

Urea Mass spectrometry Tamm-horsfall protein Urinary extracellular vesicle Biomarker

Identification of the late endosome LE/MVB proteome related to the endosomal microautophagy eMI activity in the rat liver.

To identify the late endosome LE/MVB proteome related to the endosomal microautophagy eMI activity we purified subcellular organelles including cytosol, late endosomes (LE/MVBs) and lysosomes (CMA+) from the rat liver and performed co-Ip experiment with antibodies directed against the major cellular...

ORGANISM(S): Rattus norvegicus (Rat)

2024-01-26 | PXD046797 | Pride

Cma vs microautophagy hsc-70-co-ip-ms/ms in late endosomes Rat liver Lysosomes and cytosol

Murine kidney glomeruli phosphorylation

Isolated murine kidney glomeruli were lysed in buffer containing 8M urea, and proteins were reduced and alkylated. Proteins were digested with trypsin. After reverse-phase chomatrography, peptides were fractionated using strong cation exchange chromatography. Phosphopeptides were enriched using IMAC...

ORGANISM(S): Mus musculus (Mouse)

2016-05-09 | PXD000266 | Pride

Mouse Podocytes Kidney Glomerular epithelial cell Phosphoproteomics

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