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TranscriptomicsRNA-seq of small intestinal organoids treated with IL-13 for 0, 1, 4 8 and 24 hours and with the BMP signaling inhibitor DMH1
The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. The changes in cellular composition is driven by immune cell derived cytokines. Here we investigate ...
ORGANISM(S): Mus musculus 
2022-05-08 | E-MTAB-10455 | biostudies-arrayexpress
TranscriptomicsRNAseq of small intestinal organoids from mice treated with the cytokines IFNG, IL-13 and IL-22 for 24 hours
The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. The changes in cellular composition is driven by immune cell derived cytokines. Here we use signatur...
ORGANISM(S): Mus musculus 
2022-05-08 | E-MTAB-9182 | biostudies-arrayexpress
TranscriptomicsRNAseq of small intestinal epithelium extracted from mice infected with Nippostrongylus brasiliensis
The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. Here we sequenced the small intestinal epithelium from mice infected with Nippostrongylus brasiliens...
ORGANISM(S): Mus musculus 
2022-05-08 | E-MTAB-9183 | biostudies-arrayexpress
TranscriptomicsRNA-seq of small intestinal organoids treated with IL-22 for 0, 1 and 4 hours
The intestinal epithelium is our first line of defence against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. The changes in cellular composition is driven by immune cell derived cytokines. Here we investigate ...
ORGANISM(S): Mus musculus 
2022-05-08 | E-MTAB-11273 | biostudies-arrayexpress
TranscriptomicsRNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium
The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. Here we sequenced the colon intestinal epithelium from mice infected with Citrobacter rodentium to d...
ORGANISM(S): Mus musculus 
2022-05-08 | E-MTAB-9184 | biostudies-arrayexpress
TranscriptomicsRNA-seq of mouse small intestinal epithelium at different development stages (E18.5, P7, P21)
To assess the role of genes in development in mouse small intestinal epithelium, we isolated intestinal epithelium tissue from wild type mice at E18.5, P7 and P21. RNA was directly isolated used for RNA seq and were able to investigate gene expression at different development stages
ORGANISM(S): Mus musculus 
2020-11-16 | E-MTAB-8713 | biostudies-arrayexpress
TranscriptomicsRNA-seq of small intestinal organoids treated with an inhibitor for the epigenetic modifier LSD1
To assess the role of LSD1 in mice small intestinal epithelium, small intestinal organoids were treated with an inhibitor for LSD1 (GSK-LSD1) and compared to untreated organoids. Similar to intestinal epithelium from mice with an intestinal epithelium specific LSD1-KO, paneth cells dissappear upon G...
ORGANISM(S): Mus musculus 
2020-11-16 | E-MTAB-9077 | biostudies-arrayexpress
TranscriptomicsRNA-seq of crypt cells from mouse small intestinal epithelium with an intestinal-epithelial specific deletion of LSD1 compared to wild type crypts
To assess the role of LSD1 in mouse small intestinal epithelium, we isolated small intestinal crypts from wild type (WT) (Villin-Cre -; Lsd1f/f) and intestinal-epithelial-specific knock-out (KO) (Villin-Cre+; Lsd1f/f) mice. We dissociated crypts into single cells, and FACS sorted Epcam+ cells, to av...
ORGANISM(S): Mus musculus 
2020-11-16 | E-MTAB-7862 | biostudies-arrayexpress
TranscriptomicsHuman small intestinal organoids grown with a specific protocol to enrich for Paneth cells were treated with an inhbitor (GSK-LSD1) for the epigenetic modulator LSD1.
To assess the role of LSD1 in human intestinal epithelium, human small intestinal organoids were treated with an inhibitor for LSD1 (GSK-LSD1) and compared to untreated organoids. The organoids were grown with specific conditions where Paneth cells are present in the organoids as similar experiments...
ORGANISM(S): Homo sapiens 
2020-11-16 | E-MTAB-7863 | biostudies-arrayexpress
GenomicsChIP-sequencing of the H3K4me1/2 in crypts from mice intestinal epithelium with intestinal epithelium specific LSD1 knock out compared to wild type
To study the epigenetic regulation of intestinal epithelium we focus on the role of chromatin modulators. Lysine-specific histone demethylase 1a (KDM1A, LSD1) is one of the enzymes that can erase the H3K4me1/2 mark. To assess the role of LSD1 in intestinal epithelium we studied wild type (WT) (Villi...
ORGANISM(S): Mus musculus 
2020-11-16 | E-MTAB-7871 | biostudies-arrayexpress
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