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ProteomicsA draft map of the human proteome
The availability of human genome sequence has transformed biomedical research over the past decade. However, an equivalent map for the human proteome with direct measurements of proteins and peptides does not exist yet. Here, we report a draft map of the human proteome based on high resolution Fouri...
ORGANISM(S): Homo sapiens (Human) 
2014-04-24 | PXD000561 | Pride
Proteogenomics Human proteome map Lc-ms/ms 
ProteomicsReanalysis of Pandey lab's draft of the human proteome
The availability of human genome sequence has transformed biomedical research over the past decade. However, an equivalent map for the human proteome with direct measurements of proteins and peptides was lacking. To this end, Akhilesh Pandey's lab reported a draft map of the human proteome based on...
ORGANISM(S): Homo sapiens 
2015-03-10 | E-PROT-1 | biostudies-arrayexpress
ProteomicsIntegrated transcriptomic and proteomic analysis of human eccrine sweat glands
The eccrine sweat gland is an exocrine gland that is involved in the secretion of sweat for control of temperature. Malfunction of the sweat glands can result in disorders such as miliaria, hyperhidrosis and bromhidrosis. In addition, inadequate reabsorption of salt from sweat is a major feature of ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-07-12 | MSV000084086 | MassIVE
ProteomicsMycobactrium tubrculosis Proteogenomics
Indepth proteomic profiling of Mycobacterium tuberculosis was performed fpr the purpose of genome annotation
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2018-09-06 | PXD010956 | Pride
Tuberculosis h37rv proteogenomics 
ProteomicsMtb_H37Rv_IOB
M. tuberculosis H37Rv from Akhilesh Pandey and colleagues at the Institute of Bioinformatics, Bangalore, India.
ORGANISM(S): Mycobacterium Tuberculosis 
2011-12-31 | PAe001767 | PeptideAtlas
ProteomicsA proteomic map of the human aqueous humor
The aqueous humor is a colourless, transparent fluid that fills the anterior chamber of the eye. It has an important role to play in maintaining the intraocular pressure of the eye and providing nourishment to avascular structures such as the lens and cornea. It is also essential for providing a cle...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-11-29 | MSV000081764 | MassIVE
ProteomicsImmunogenic noncoding cryptic peptides dominate the antigenic landscape of ovarian cancer
Increased infiltration of CD3+ and CD8+ T cells into ovarian cancer (OC) tumors is linked to better prognosis, but the specific antigens involved are unclear. Recent data suggests that HLA-I can present peptides from noncoding genomic regions, known as noncanonical or cryptic peptides, but their imm...
ORGANISM(S): Homo sapiens (Human) 
2025-01-14 | PXD055609 | Pride
Immunopeptidomics Proteogenomics Noncanonical peptides Neoantigens 
ProteomicsDIA-based proteome profiling of nasopharyngeal swabs from COVID-19 patients
We sought to characterize the host response through proteome profiling of nasopharyngeal swab specimens. A mass spectrometer combining trapped ion mobility spectrometry and high-resolution QTOF mass spectrometer with a parallel accumulation-serial fragmentation (PASEF) was deployed for unbiased prot...
ORGANISM(S): Homo sapiens (Human) 
2021-09-10 | PXD025277 | Pride
Nasopharyngeal swabs Timstof Covd-19 Host response Dia 
ProteomicsDigging deeper into the HLA peptidome – Characterization of the post-translationally modified peptides
Peptides displayed by MHC molecules on a cell’s surface, referred to as its immunopeptidome, play an important role in the adaptive the immune response. Antigen processing for MHC class I presentation is a ubiquitous pathway present in all nucleated cells which generate and present peptides of both ...
ORGANISM(S): Homo sapiens (Human) 
2021-06-07 | PXD024562 | Pride
Spliced peptides Immunopeptidome Post-translational modifications Mhc class i Mhc binding motifs 
ProteomicsMass spectrometric analysis of urine from COVID-19 patients for detection of SARS-CoV-2 viral antigen and to study host response
SARS-CoV-2 infection has become a major public health burden and is known to affect many organs with the respiratory system being involved in a majority of cases. Here we undertook a mass spectrometry-based proteomic approach to test whether viral proteins could be detected in urine of patients with...
ORGANISM(S): Homo sapiens (Human) 
2021-06-07 | PXD024967 | Pride
Covid-19 urine Quantitative proteomics Antigen detection Host response 
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